PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02868g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 306aa MW: 33874 Da PI: 5.426 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.4 | 6e-14 | 119 | 166 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+r + f+ L + +P + kKl+Ka+iLe ++YI +Lq Peinf101Scf02868g00006.1 119 QDHLMAERKRRERFSQLFASLAKTIPGL-----KKLDKASILEDSIKYIEQLQ 166 67999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.046 | 116 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-11 | 119 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-14 | 120 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.49E-11 | 121 | 170 | No hit | No description |
SuperFamily | SSF47459 | 7.2E-15 | 121 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-13 | 122 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MENTNYNNLE NNTGGEEAPF EFKNLLSEMF TSFPNQNPSS SSLEHGNTNL KVALPSSPSS 60 TSSNSSSSSH NMISFGNPAE SNFLGDEQDY DMMSVEKVMT LSSSTSLPKR ISRSPLQSQD 120 HLMAERKRRE RFSQLFASLA KTIPGLKKLD KASILEDSIK YIEQLQGRVR ALEEAGTKRN 180 LNIESTATPK QSLAATDDKT FLTKDIADDD CSMKSNPENE IKVQIVDKNV LIGIHCSNSR 240 RNIFSLIAGT MEKLHLTIHN IRVTPFNLTA LNIAILSQID QNVVITVQDV EKAFELALFS 300 TPNPAD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 129 | ERKRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019249041.1 | 1e-121 | PREDICTED: transcription factor bHLH18-like | ||||
TrEMBL | A0A1J6IQ15 | 1e-119 | A0A1J6IQ15_NICAT; Transcription factor bhlh18 | ||||
STRING | XP_009623662.1 | 1e-116 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12598 | 11 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 1e-29 | bHLH family protein |