PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02856g02001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 367aa    MW: 42820.6 Da    PI: 9.9161
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02856g02001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.64.9e-2457143190
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               +fY +Y ++ GFsvr+ + +ks+++++++ + fvCskeg+r ++  k   ++r++ +tr +Ck  l v+k+++g+w + +l+ +H
  Peinf101Scf02856g02001.1  57 NFYLDYTHRNGFSVRRGRVTKSRKDKSVIGQVFVCSKEGFRPKKYFK---NNRPQDVTREECKVLLYVSKKEEGTWAIRRLVFDH 138
                               6****************************************998877...999******************************** PP

                      FAR1  86 nHela 90 
                               nHela
  Peinf101Scf02856g02001.1 139 NHELA 143
                               ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-2157143IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEVSNSDDQH LEGGEVTLEE IESDTDETTQ SVPDLGVENR KEPYIGMEFS SLDDAFNFYL  60
DYTHRNGFSV RRGRVTKSRK DKSVIGQVFV CSKEGFRPKK YFKNNRPQDV TREECKVLLY  120
VSKKEEGTWA IRRLVFDHNH ELATPSSQNF LRSKRKKSEA QKNLIDLLDN SGVRPDRWTR  180
NATKEKVDDY PNETKKLRPA LWFSNIMMHS IGLSERATRS EKYYQLAQLR LFQLCEELDE  240
LPYEFEKDCV KGAQVSESNL ELNSSEQSHK ITLLDPPRTA TKGRPRSLRM KSPLESTRKT  300
QKVLLKDKKG QRKNTKLKSK GISNLNNIQN FIKDTLRTVF MHIPPHLRVV YKHERRFIAL  360
METDRQA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7EE032e-70A0A3Q7EE03_SOLLC; Uncharacterized protein
STRINGSolyc01g110070.1.11e-34(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA645860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.29e-25FAR1 family protein