![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf02805g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 183aa MW: 20202.1 Da PI: 8.3846 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.9 | 1.7e-08 | 12 | 31 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 f+ +tGtCk+G+ CkF+H++ Peinf101Scf02805g00020.1 12 FYKKTGTCKFGAICKFHHPR 31 8*****************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00642 | 1.6E-6 | 12 | 31 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-4 | 12 | 32 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 9.235 | 12 | 32 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MWFVQLSWSG LFYKKTGTCK FGAICKFHHP REIQLTSLKQ ENSSAGMPGS ANNGMTEDVT 60 LIKQLSVPAL LHNSKGPPIR PGEVDCPFYV NTSRVSKMVI HQTCRLSSLR LSHIGGFGGG 120 ITVKELKGGN ISEVTLLDEL NSNELESQYE CLATRALLRQ PSSPPSSSEQ FMEHNSVCTR 180 IQF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12680.1 | 5e-21 | floral homeotic protein (HUA1) |