PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02695g02052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 300aa MW: 33122.9 Da PI: 9.957 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.7 | 2.3e-12 | 50 | 94 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Peinf101Scf02695g02052.1 50 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 94 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.84E-16 | 44 | 100 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.18 | 45 | 99 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.4E-18 | 48 | 97 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.0E-6 | 48 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-10 | 49 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-10 | 50 | 94 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.07E-7 | 52 | 95 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MVMALPNLGS FSNPTVAVAA AATGSNSNPL SPSDDPSKKI RKPYTITKSR ESWTEPEHDK 60 FLEALQLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK SGTNEHLPPP RPKRKAAHPY 120 PQKASKSAPA VSAVPAPFQA SLPLPDPGFA KRPDSSLLAS NPITVVSVPS WTDNAVPPVS 180 LSQVKKDNAR ETAQPLANNQ CCSSNESTPR SKATGEVMER IQVPSMRVLP DFAQVYNFIG 240 SVFDPAVTGH LQKLKKMDRI DVETVLLLMR NLSINLTSPD FEHHRQLLSS YDIDMEKQCK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00625 | PBM | Transfer from PK02532.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254360 | 1e-54 | AC254360.3 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone slm-20n17 map 6, complete sequence. | |||
GenBank | AC254409 | 1e-54 | AC254409.2 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone slm-45k12 map 6, complete sequence. | |||
GenBank | AC254421 | 1e-54 | AC254421.3 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone hba-44l22 map 6, complete sequence. | |||
GenBank | AC254464 | 1e-54 | AC254464.2 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone slm-62j20 map 6, complete sequence. | |||
GenBank | AC254493 | 1e-54 | AC254493.3 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone hba-15i11 map 6, complete sequence. | |||
GenBank | AC254498 | 1e-54 | AC254498.2 Solanum lycopersicum strain Heinz 1706 chromosome 6 clone sle-6i6 map 6, complete sequence. | |||
GenBank | HG975518 | 1e-54 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016575737.1 | 0.0 | PREDICTED: protein REVEILLE 6 isoform X1 | ||||
Swissprot | Q8H0W3 | 1e-110 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A2G3C655 | 0.0 | A0A2G3C655_CAPCH; Protein REVEILLE 3 | ||||
STRING | XP_009802901.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA998 | 24 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 1e-89 | MYB_related family protein |
Publications ? help Back to Top | |||
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