PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02612g00004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 284aa    MW: 32559.7 Da    PI: 7.9224
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02612g00004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.42e-12152177126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               y   +C+++ +tG+C yGd+CkF+H+
  Peinf101Scf02612g00004.1 152 YQPDICKDYKETGYCGYGDSCKFMHD 177
                               67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.31E-9149182IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7151178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878151179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-12152182IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-10152177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.106.6E-13210265IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.14E-12223266No hitNo description
PfamPF139206.7E-9223265No hitNo description
SMARTSM001846.1E-5224261IPR001841Zinc finger, RING-type
CDDcd001621.78E-7224265No hitNo description
PROSITE profilePS5008910.409224262IPR001841Zinc finger, RING-type
PROSITE patternPS005180239248IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MVEEGENEET EGKSSIIFTK KKPAAADHKL HFSTGSSKSN TPTESSVRFH FESSKKIQLQ  60
TDNRATSTLE TETEFSKDAR AIRERALKLA EEALKGKSKT GGDEKLYKGM NQYIDYKFGL  120
KREHTISREK AGGAHGPLRA SAHIRVSTRF DYQPDICKDY KETGYCGYGD SCKFMHDRGD  180
YKSGWQLEKE WDEAEKERKR KLVMGMFEED DEDAENDDAL PFACFICRQP FVDPVVTKCK  240
HYFCEHCALK QHAKNKKCFV CNQPTLGIFN IAFEIRKRMA AQEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-6662279113317RING finger protein 113A
5z58_M1e-6662279113317RING finger protein 113A
6ff4_t1e-6662279113317RING finger protein 113A
6ff7_t1e-6662279113317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-168HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233105.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-139C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A1J6KDY70.0A0A1J6KDY7_NICAT; Zinc finger ccch domain-containing protein 1
STRINGXP_009609000.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-139C3H family protein