 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Peinf101Scf02569g02016.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
| Family |
C2H2 |
| Protein Properties |
Length: 428aa MW: 49271.9 Da PI: 8.7506 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Peinf101Scf02569g02016.1 | genome | SGN | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 20.4 | 1.4e-06 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C++C+ sF r nL+ H r+H
Peinf101Scf02569g02016.1 55 YVCEICNLSFQREQNLQMHRRRH 77
9*********************9 PP
|
| 2 | zf-C2H2 | 17.1 | 1.6e-05 | 141 | 163 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k + +s++k Hi+t+
Peinf101Scf02569g02016.1 141 WVCEKCSKGYAVQSDYKAHIKTC 163
58*******************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 428 aa
Download sequence Send
to blast |
MLASNSFLFP APSSEPFSEE NGFIMKRKRR PAGTPDPDAQ VVYLTAEMLM ESDRYVCEIC 60
NLSFQREQNL QMHRRRHKVP WKLKKKEEEK NNTIENMEQV KKRVYVCPEP SCVHHDPCHA 120
LGDLVGIKKH FRRKHSNYKQ WVCEKCSKGY AVQSDYKAHI KTCGTRGHSC DCGRVFSRVE 180
TFIEHQDSCK PQSTRECDVL KPKQSLLPQT TYNPPHCFSN YSNSSGFGKE PHHPNHYSRM 240
PKNTTHPNLD LELFTSPTNQ NTQHYSSIQN EHPQQLNLSF DGKSHYQVQH NEDKKEGRGN 300
FQEKTFMEET AIQVLKLKGE ANQILKIAME QKAMAAEKRQ EAKCLIELAN LEMAKAREIK 360
QQLLAEYSTA DQLLKSCATM KSVGSHVMQV TCSSCNKQLQ TVSKEAACKE VYPSLTNYLS 420
SATYRRWN
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975444 | 3e-71 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
| GenBank | HG975517 | 3e-71 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Kim JY,Ryu JY,Baek K,Park CM
High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
New Phytol., 2016. 209(1): p. 265-79
[PMID:26256266] - Ryu JY,Kim JY,Park CM
Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
Plant Signal Behav, 2015. 10(11): p. e1093715
[PMID:26452406] - Qu Y, et al.
Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
J. Exp. Bot., 2017. 68(17): p. 4851-4867
[PMID:28992128] - Shi H, et al.
Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
J. Pineal Res., 2018. 65(2): p. e12494
[PMID:29607541]
|
