PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02545g01025.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 399aa    MW: 46810.6 Da    PI: 8.1536
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02545g01025.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.72.9e-16941711690
                      FAR1  16 kskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                                ++  + ++  ei+kr++vC++ g+++++k  +++++r r+++r++Ckak+ ++k+       w v  ++++HnHel 
  Peinf101Scf02545g01025.1  94 ERHLGSAEHPMEIYKREYVCYRTGSPQSQKVVEKERQRDRKSSRCNCKAKMSISKDIidgVTCWTVVYFNNDHNHELL 171
                               555555667789******************99999999*****************98855678*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1393171IPR004330FAR1 DNA binding domain
PfamPF105515.4E-11277327IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGSRLWTVRR CECKKATEAS FRRGEKKGRR GNIITIFFKI VGVQERGDNQ VARGLQESVQ  60
RGIKGVQLVF GELREHVVYP EVCVRVWHPE GVRERHLGSA EHPMEIYKRE YVCYRTGSPQ  120
SQKVVEKERQ RDRKSSRCNC KAKMSISKDI IDGVTCWTVV YFNNDHNHEL LSDKELITLL  180
AKAGCSISLI RRVIELEEGA DPGELPFTEK DIRNFVQSES FIYIEDDALE LLKICKSLKD  240
KNVDFKYDFT VDECQRLEHI IWAFGDFMRA YEVFGDVIIF DTTYRLNRYE MPLGVWIGVD  300
NHGIYIFFGC VLLRNEKAFS FSWALKVNTH NFNTEFHRLY ELGSREEFEY QWDKLISQFG  360
LGTDRHLKLL YNSRALWALP YLKGYFFCKN GNNWMLGIY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016499085.11e-135PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
TrEMBLA0A1S4CD641e-134A0A1S4CD64_TOBAC; protein FAR1-RELATED SEQUENCE 11-like
STRINGXP_009596355.11e-119(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7183722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.17e-83FAR1-related sequence 11