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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02502g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 170aa MW: 18435.8 Da PI: 7.5723 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.7 | 3.5e-10 | 14 | 45 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT+eEd++l+++++ +G g+W++ ++ g Peinf101Scf02502g00011.1 14 KGAWTKEEDQRLINYIRTHGEGCWRSLPKAAG 45 79***********************9988665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-12 | 5 | 43 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.61E-8 | 9 | 45 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.306 | 9 | 42 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 2.3E-8 | 14 | 44 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.53E-6 | 16 | 42 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQRLINYIR THGEGCWRSL PKAAGIYCST IKSTSTAATP 60 LSQNDQKPMS NSISSLEDTK CNSSTTEEVQ PLDSPLVAPP VTGEVMINLE LSIGLPIFQA 120 KITDQSSSIS SNSAKEIGGK TVCLCWQVGS QNGQQFCGKC QTTNGFYRYC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC209513 | 2e-43 | AC209513.1 Solanum lycopersicum chromosome 6 clone C06HBa0286N17, complete sequence. | |||
GenBank | HG975518 | 2e-43 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009772294.1 | 2e-38 | PREDICTED: myb-related protein 330-like | ||||
Refseq | XP_016495904.1 | 2e-38 | PREDICTED: myb-related protein 330-like | ||||
TrEMBL | A0A1S4C4A4 | 6e-37 | A0A1S4C4A4_TOBAC; myb-related protein 330-like | ||||
TrEMBL | A0A1U7WCB1 | 6e-37 | A0A1U7WCB1_NICSY; myb-related protein 330-like | ||||
STRING | XP_009772294.1 | 9e-38 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15484 | 7 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 2e-27 | myb domain protein 6 |