PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf02481g00001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

ZF-HD

Protein Properties

Length: 371aa MW: 40583.9 Da PI: 8.2476

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02481g00001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	112.1	2.9e-35	67	124	4	60
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60 v YkeClkNhAaslGghavDGCgEfmps++++ +++++lkCaACgCHRnFHRre+e++ Peinf101Scf02481g00001.1 67 VLYKECLKNHAASLGGHAVDGCGEFMPSPSANaTDPTSLKCAACGCHRNFHRREPEDQ 124 78**************************9999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.8E-29	67	121	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.5E-32	69	120	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.489	69	120	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-22	69	123	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.46E-18	228	296	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-29	229	297	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.5E-25	235	292	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MDITNNNHNT STTTTHVTKT TEAETHETQT PIRIQPVKPI SFSNGVLKRH NSLQHQHQLH 60 HHHPVVVLYK ECLKNHAASL GGHAVDGCGE FMPSPSANAT DPTSLKCAAC GCHRNFHRRE 120 PEDQVLVNHN TTAALEYQPL HRHHPPPPPP PQLALPPHHH HGGAHSTGSP INSPSSPPPI 180 SSAYYPASAP HMLLALSTGG GLSAPPPPPP DSNNINNLNQ NLISPVQFSS NPNSRKRFRT 240 KFTQNQKERM LEFAERIGWK IQKRDEDVIN EFCRNIGVEK GVLKVWMHNN KNTFGKKSDA 300 VNSNSNVAAT VIHNINHNIN VNTSNGNGFG HMDPTTTAVE FHLHHESSTD KNDDSVSAHN 360 VVGTNGSSSS S

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MDITNNNHNT STTTTHVTKT TEAETHETQT PIRIQPVKPI SFSNGVLKRH NSLQHQHQLH  60
HHHPVVVLYK ECLKNHAASL GGHAVDGCGE FMPSPSANAT DPTSLKCAAC GCHRNFHRRE  120
PEDQVLVNHN TTAALEYQPL HRHHPPPPPP PQLALPPHHH HGGAHSTGSP INSPSSPPPI  180
SSAYYPASAP HMLLALSTGG GLSAPPPPPP DSNNINNLNQ NLISPVQFSS NPNSRKRFRT  240
KFTQNQKERM LEFAERIGWK IQKRDEDVIN EFCRNIGVEK GVLKVWMHNN KNTFGKKSDA  300
VNSNSNVAAT VIHNINHNIN VNTSNGNGFG HMDPTTTAVE FHLHHESSTD KNDDSVSAHN  360
VVGTNGSSSS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	7e-22	234	293	16	75	ZF-HD homeobox family protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009620291.1	1e-112	PREDICTED: zinc-finger homeodomain protein 9-like
TrEMBL	A0A1S4B4C9	1e-109	A0A1S4B4C9_TOBAC; zinc-finger homeodomain protein 9-like
STRING	XP_009620291.1	1e-111	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1088	24	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15210.1	1e-34	homeobox protein 30