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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Peinf101Scf02470g01030.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family |
LBD |
Protein Properties |
Length: 168aa MW: 18574.2 Da PI: 7.303 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Peinf101Scf02470g01030.1 | genome | SGN | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 142 | 1.8e-44 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85
+Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+
Peinf101Scf02470g01030.1 6 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPIQQRGDAVSSLVYEANARVRDPVYGCVGAISFLQN 90
7************************************************************************************ PP
DUF260 86 qleqlkaelallkee 100
q++ql+ +la++++e
Peinf101Scf02470g01030.1 91 QVSQLQMQLAVAQAE 105
***********9987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 168 aa
Download sequence Send
to blast |
MGGSSPCASC KLLRRRCAKD CIFAPYFPPD DPHKFAIVHK VFGASNVSKM LQELPIQQRG 60 DAVSSLVYEA NARVRDPVYG CVGAISFLQN QVSQLQMQLA VAQAEILCIQ MQHEPVSLPT 120 TLIEPDEKSP FSTSNATNNF NNLQQYLTFA SSSTSVMQDT VKRESLWT
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Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | HG975445 | 2e-58 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
GenBank | HG975518 | 2e-58 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |