PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Peinf101Scf02470g00018.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 208aa MW: 22567.7 Da PI: 8.7135

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02470g00018.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.1	5.3e-42	34	133	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll+++p +r da++slvyeA++r+rdPvyG++g i++lqq Peinf101Scf02470g00018.1 34 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLQEVPVGQRADAANSLVYEANVRLRDPVYGCMGAISTLQQ 118 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 q+++l+ael++l++e Peinf101Scf02470g00018.1 119 QVQTLQAELNALRAE 133 ********99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.303	33	134	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-42	34	131	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
ERLDAIGKKL KTEIDASNSQ QEMGRRHILN TVTPCAACKL LRRRCAEECP FSPYFSPHEP 60 QKFAAVHKVF GASNVSKLLQ EVPVGQRADA ANSLVYEANV RLRDPVYGCM GAISTLQQQV 120 QTLQAELNAL RAEILRYKYR EAANTLIASI STSVAELPQA PPTPSPPPPP SVVVVSSSST 180 SSVSSLYTPP SNGAKFSPIP NNSIPYFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-46	34	141	11	118	LOB family transfactor Ramosa2.1
5ly0_B	6e-46	34	141	11	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	4e-75	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	4e-75	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015078806.1	1e-101	LOB domain-containing protein 13
Swissprot	Q8L5T5	1e-69	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A3Q7H202	1e-99	A0A3Q7H202_SOLLC; Uncharacterized protein
STRING	Solyc06g082430.1.1	1e-100	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	4e-72	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]