PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02377g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | AP2 | ||||||||
Protein Properties | Length: 485aa MW: 54866.2 Da PI: 7.7523 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.3 | 3.3e-17 | 164 | 213 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Peinf101Scf02377g00005.1 164 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 213 78*******************......55************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.77E-13 | 164 | 216 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.3E-9 | 164 | 213 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-14 | 165 | 215 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-24 | 165 | 225 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.41 | 165 | 234 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-6 | 238 | 283 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.28E-12 | 238 | 281 | No hit | No description |
SMART | SM00380 | 2.7E-11 | 239 | 287 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MWNLNDSPDQ RMEEESEEAC SSPIDEKGKR VGSVSNSSSS AVVIEDGNNN NNSEDEDEEE 60 EDDEKGKKKR SIHNKIFGFS VMDPNNYRDL SESEQPVTRN FFPVEESEMG SSTNLPRSQW 120 AGIKFYHESE TRGSTVLAGN PTEIVVQQQQ PVKKSRRGPR SRSSQYRGVT FYRRTGRWES 180 HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGMTNLTKE EFVHVLRRQS TGFPRGSSKY 240 RGVTLHKCGR WEARMGQFLG KKAYDKAAIK CNGKDAVTNF DRSIYENELN TTEFTDNAAD 300 HNLDLSLGSS SSKEGSRELM GDNRGQNFQL DVDWRNQGSR PKLPNPIGFD TQRRGGYNES 360 ETLQLLSQTH IHSPGSLQPN INEMQRFGQF TRNGESHMVQ VFPRQFSSYQ NQSPSSSNVG 420 QIGTTNARDV LSLTTSNSQE WYHPNIPPHH IFATAAASSG FPQQIVRPQN WSQKTGFHHT 480 FMRPP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU677382 | 6e-64 | EU677382.1 Solanum lycopersicum APETALA2-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019239438.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2 | ||||
Swissprot | P47927 | 4e-94 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A2H4FXU5 | 0.0 | A0A2H4FXU5_PETHY; ROB2 | ||||
STRING | XP_009767489.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2019 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 7e-79 | AP2 family protein |