PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02339g04017.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 477aa    MW: 50087.1 Da    PI: 8.2593
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02339g04017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.54e-123963327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                              ++ C +++rtG+C yG+rC+F+H++
  Peinf101Scf02339g04017.1 39 EPDCIYYLRTGFCGYGSRCRFNHPR 63
                              799********************96 PP
2zf-CCCH382.8e-1284109227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               +++ C++++rtG Ck+G++Ck++H++
  Peinf101Scf02339g04017.1  84 GQPVCQYYMRTGMCKFGASCKYHHPR 109
                               5789********************96 PP
3zf-CCCH35.32e-11130155227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++C+++ +tG+Ck+G +CkF+H++
  Peinf101Scf02339g04017.1 130 GEKECSYYVKTGQCKFGVTCKFHHPQ 155
                               7899********************97 PP
4zf-CCCH36.48.8e-12300325126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +++++C++++++G CkyG++C+++H+
  Peinf101Scf02339g04017.1 300 PGQPECQYYMKYGDCKYGSSCRYHHP 325
                               5789*********************9 PP
5zf-CCCH35.61.5e-11348372327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                ++C+++a++G Ck+G++CkF H++
  Peinf101Scf02339g04017.1 348 APICSHYAQNGVCKFGPSCKFDHPM 372
                               589********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.5E-63663IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8963664IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-93963IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-64065IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-54263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.84582110IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-682109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-683109IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-984109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-587109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389128156IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5128155IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-9130155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6130156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4134154IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5299326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.07299327IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-9301325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5303327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6344371IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878345373IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7345372IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-9348372IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5350370IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
VDPVTEWTVP GGETGLEEPM WQLTLGNTGP ESYPERPNEP DCIYYLRTGF CGYGSRCRFN  60
HPRDRNSVLG AMRATGGEYP ERMGQPVCQY YMRTGMCKFG ASCKYHHPRQ GGGSPAPVTV  120
NIYGYPLRPG EKECSYYVKT GQCKFGVTCK FHHPQPAGAQ VPAPAAGPGP MTAPAAVPAP  180
HIYPTVQSPS VQSAQQYGVV SGNWPVARPT LLPGSYIPGT YGSMLLPPGM VPLPGWTPYP  240
APVSPVPSQS TQPAAAAGTI YGLSQLSPSA PAYTGPYLSV ASSGGPSSSS QKEHAFPERP  300
GQPECQYYMK YGDCKYGSSC RYHHPTEWSG PKTSFILSAM GLPLRPGAPI CSHYAQNGVC  360
KFGPSCKFDH PMGMSYSPSA SSLADMAIAP YPVGSSIGTL APSSSSSDLR PELASGSGRD  420
AFSTQISSMS TSSGSVGSMF SKSGPTSHSG IQQSVQSSNP SSGSSSSGHG GEPRTSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2437121e-123AC243712.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44j2 map 1, complete sequence.
GenBankHG9754401e-123HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755131e-123HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226016.10.0PREDICTED: zinc finger CCCH domain-containing protein 58-like
SwissprotQ84W911e-164C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A314KSJ40.0A0A314KSJ4_NICAT; Zinc finger ccch domain-containing protein 34
STRINGSolyc01g067550.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-133C3H family protein