PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02326g03024.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 324aa    MW: 35033.1 Da    PI: 8.1272
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02326g03024.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.19.6e-061111525
                              -TTTTT-SS-S CS
                   zf-CCCH 15 CkyGdrCkFaH 25
                              C+yGdrCkF H
  Peinf101Scf02326g03024.1  1 CQYGDRCKFLH 11
                              *********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.836114IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
CQYGDRCKFL HAAQQQPKQN PFGFGGQNTN FQNTNVQQPR SNPFGNVQSN SQPGANPFGF  60
GVQSNSQPRG ANNSGLTQNQ YKPFENKWTR AASTNSSPLR QSDNQPVAPN HTCTDPDSCK  120
RQIVEDFNNE KPLWILTCYG HRKSGPCDIT GDVSYEELRA AAYDDAKRGQ SLMSIVERER  180
SLLNSKVAEF ENLLRNPYVA PSSSAPNAQS PFPGATPNAA LSAQNSSPPS ASSSFGFGSQ  240
ATSQSYQNGF APSNISASSE RNPFSTSTTS HHFPNPSGSQ LSTQVHFPAS VAVSPVSINL  300
ASGAEKEEFS GDNSIWTKKE WKIG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015061935.11e-150zinc finger CCCH domain-containing protein 16
TrEMBLM0ZT361e-148M0ZT36_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000075021e-148(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94392022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.14e-53C3H family protein