PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02318g10040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 95aa MW: 10437.8 Da PI: 10.1054 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.1 | 1.1e-09 | 8 | 56 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 g+WT+ + + +a + + ++ +W+ +a+ +g g+t++++k ++ k+ Peinf101Scf02318g10040.1 8 GSWTAKQNKAFEKALAVYDKEtpdRWSNVAKAVGGGKTAEEVKRHYEKL 56 78*****************99*************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.4E-8 | 6 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-5 | 8 | 58 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.806 | 8 | 57 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 3.7E-7 | 8 | 56 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.21E-12 | 8 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.72E-6 | 9 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MSSQGSVGSW TAKQNKAFEK ALAVYDKETP DRWSNVAKAV GGGKTAEEVK RHYEKLVHDI 60 MMQKSLAPAS NETKKHATLA TTLQHLLQEN KPATS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-23 | 2 | 60 | 3 | 60 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016473084.1 | 1e-32 | PREDICTED: protein RADIALIS-like 1 | ||||
Swissprot | Q1A173 | 4e-24 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A1S4A932 | 3e-31 | A0A1S4A932_TOBAC; protein RADIALIS-like 1 | ||||
STRING | Lus10040453 | 6e-29 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA24914 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 2e-26 | RAD-like 6 |