PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02318g05032.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GATA
Protein Properties Length: 301aa    MW: 33891.2 Da    PI: 7.9461
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02318g05032.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.71.6e-18218251134
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                               C++C++ kTp+WR gp g+ktLCnaCG++y++ +
  Peinf101Scf02318g05032.1 218 CTHCQVNKTPQWRTGPLGPKTLCNACGVRYKSGR 251
                               *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.44212248IPR000679Zinc finger, GATA-type
SMARTSM004012.6E-13212262IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-14214275No hitNo description
Gene3DG3DSA:3.30.50.104.1E-14215249IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.41E-13217266No hitNo description
PfamPF003203.3E-16218251IPR000679Zinc finger, GATA-type
PROSITE patternPS003440218243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MELIEARALK SSFYSDMAMK TSQQVFLDDI WCVTGINNVP SDDFSVDDLL DFSDKEFKDG  60
SFQELHEDDE KDSFFGSSQH RNSQVSDFSN MESFSGELPV PGKTGGFQES RSEPAVPKIR  120
APCFPLPVQR KPRSKRSRPI SKDRLLDRLF STWSFLSSPP VSADTCSPTS SSYGSSPFPS  180
FLFMNPVQEH DMFCSVEKPA LKKPKKNVST EPGSGRRCTH CQVNKTPQWR TGPLGPKTLC  240
NACGVRYKSG RLFPEYRPAC SPTFSEEMHS NSHRKVLEMR RKKETPVEFV DSGLTSMVST  300
Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1076922e-93AB107692.1 Nicotiana tabacum AGP4 mRNA for AG-motif binding protein-4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802570.11e-147PREDICTED: GATA transcription factor 5-like
TrEMBLA0A1U7YUW41e-145A0A1U7YUW4_NICSY; GATA transcription factor
STRINGXP_009802570.11e-146(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.14e-40GATA transcription factor 4