PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02312g03028.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HD-ZIP
Protein Properties Length: 823aa    MW: 90581.8 Da    PI: 6.7118
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02312g03028.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.9e-191573357
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Peinf101Scf02312g03028.1 15 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73
                              5679*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5161074IPR001356Homeobox domain
SMARTSM003895.2E-161278IPR001356Homeobox domain
SuperFamilySSF466898.55E-171578IPR009057Homeodomain-like
CDDcd000867.74E-171575No hitNo description
PfamPF000462.1E-161673IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-181773IPR009057Homeodomain-like
CDDcd146861.16E-667106No hitNo description
PROSITE profilePS5084826.123149377IPR002913START domain
CDDcd088759.55E-77153369No hitNo description
SuperFamilySSF559612.33E-37158370No hitNo description
SMARTSM002346.4E-43158368IPR002913START domain
Gene3DG3DSA:3.30.530.202.2E-22158363IPR023393START-like domain
PfamPF018524.7E-53159367IPR002913START domain
PfamPF086706.7E-51680822IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MSSCKDGKGV MDNGKYVRYT PEQVEALERL YHDCPKPSSM RRQQLIRECP ILSNIEPKQI  60
KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR LQKQVSHLVC ENGYFRRQSH  120
STPLATKDTS CESVVTSGQH HLTSQHPPRD ASPAGLLSIA EETLTEFLSK ATGTAVEWVQ  180
MPGMKPGPDS IGIIAISHGC TGVAARACGL VGLEPTRVAE ILKDRPSWFR DCRAVDVLNV  240
LPTANGGTIE LLYMQLYAPT TLAPARDFWL LRYTTVMDDG SLVVCERSLS NTQNGPSMPQ  300
VQNFVRAEIL PSGYLIRPCD GGGSIIHIVD HMNLEAWSVP EVLRPLYESS AVLAQKTTVA  360
ALRYLRQIAQ EVSQSNVTNW GRRPAALRAL SQRLSRGFNE ALNGLTDEGW SMLGSDGNDD  420
VTILVNSSPE KLMGLNLSFA NGFSSLSNAV MCAKASMLLQ NVPPAILLRF LREHRSEWAD  480
NNIDAYSAAA IKVGPCSLPG ARVGNFGGQM LEVIKLEGVG HSPEEAMIPR DMFLLQLCSG  540
MDENAVGTCA ELIFAPIDAS FADDAPLLPS GFRIISLESG KEASSPNRTL DLTSALETGP  600
AENKVANDLQ TIGGTSRSVM TIAFQFAFES HMQENVASMA RQYVRSIISS VQRVALALSP  660
SHLGFHGGLR LPLGTPEAHT LARWICQSYR CFLGMELLKS NTEGSESILK SLWHHSDAII  720
CCSAKSMPVF TFANQAGLDM LETTLVALQD ITLEKIFDDH GKKNLCTEFP QIMQQGFACL  780
QGGICLSSMS RPVSYERAVA WKVMNEEDTP HCICFMFVNW SFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6869250.0JQ686925.1 Nicotiana tabacum cultivar SR1 homeobox-leucine zipper protein ATHB-15-like protein (HB15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267274.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X1
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A314KZL50.0A0A314KZL5_NICAT; Homeobox-leucine zipper protein athb-15
STRINGXP_009774805.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]