PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Peinf101Scf02263g04007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

M-type_MADS

Protein Properties

Length: 176aa MW: 20365.2 Da PI: 7.8334

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02263g04007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	30.6	4.3e-10	16	62	2	48
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 +ie + n ++tfskRr + K A+ L + ++++ +i+fs+++k + Peinf101Scf02263g04007.1 16 KIEKEENLYTTFSKRRSSLYKTASDLAIQFNIDIGIILFSPKNKPFS 62 599999************************************98655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.4E-13	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.666	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.53E-18	8	78	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-8	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.2E-16	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-8	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-8	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MEVKMTRGRQ KIPMVKIEKE ENLYTTFSKR RSSLYKTASD LAIQFNIDIG IILFSPKNKP 60 FSFVHPTVEA VIDRFLDPHA QLSEGTRLVA AHVHNNVNEL NRKSKELDKI EETTNKEALE 120 YEKMKEIGPK GWWESIEQLD EDAITKFEAW LKATAFTIDR RLNQLKNEAS TSTQPL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016474013.1	4e-69	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A1S4ABV1	1e-67	A0A1S4ABV1_TOBAC; agamous-like MADS-box protein AGL61
STRING	XP_009595132.1	3e-66	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA382	20	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	9e-26	AGAMOUS-like 62