 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Peinf101Scf02263g03015.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
| Family |
CO-like |
| Protein Properties |
Length: 437aa MW: 49356.3 Da PI: 5.3095 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Peinf101Scf02263g03015.1 | genome | SGN | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 29.6 | 1.4e-09 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+++ +k+++++C ++ +lC++C ++ H+ H++v
Peinf101Scf02263g03015.1 16 ARACDNCIRKRARWYCPADDAFLCQNCDSSVHSAnplarrHERV 59
578*****************************667888888876 PP
|
| 2 | CCT | 67.3 | 4.2e-23 | 388 | 430 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+
Peinf101Scf02263g03015.1 388 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 430
9****************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 437 aa
Download sequence Send
to blast |
MVSERKLASA MGAKTARACD NCIRKRARWY CPADDAFLCQ NCDSSVHSAN PLARRHERVR 60
LKTLSLKESS SNDSSLNLKR SVPSWHRGFT RKARTPRQGK KLNKSNDEDE VILKNPLHLV 120
PEILSDENSL DENEEQLLYR VPIFDPFVAE LCSSATNEAK TGNVTNAIGN EYKEMLQHDD 180
NCNVDLNRFH HGMLPSEMEL AEFAADVESL LGKGLDDESF DMEGLGLLGS CNKEENSIEC 240
SMVSEKVKVE DEGEVEVVMD MNISHDDHQL IDTHDIDIEG ETFEFKFDYD SPVNVTGESE 300
VGEVGMKNSE VGAVGDGNNK KKILLNLDYE GVLTAWADQR SPWTNGERPE LDSNDCWPDC 360
MGNCGTIHPY GDMGIMNGQH ATIVDRGREA RVSRYREKRR TRLFSKKIRY EVRKLNAEKR 420
PRMKGRFVKR VNFAAAS
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 398 | 414 | RRTRLFSKKIRYEVRKL |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975444 | 2e-69 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
| GenBank | HG975517 | 2e-69 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT1G25440.1 | 1e-100 | B-box type zinc finger protein with CCT domain |
