PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02235g07016.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NF-YA
Protein Properties Length: 305aa    MW: 33975.3 Da    PI: 9.6651
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02235g07016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA82.85.5e-26149203258
                 CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                p++VNaKQy++Il+RR+ Rak   ekk+  k rk++lh SRh hA+rRpRg+gGrF
  Peinf101Scf02235g07016.1 149 GPIFVNAKQYHGILRRRKFRAKE-MEKKV-LKPRKQFLHLSRHLHAMRRPRGCGGRF 203
                               69*******************95.55888.8*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.7E-29146206IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115229.594147206IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-19150172IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.8E-22150203IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-19180203IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MHTIFTKGNE GIVQHTTAPW WANHVIQSVA YNEPFGHLKS ASVEQPISGN HVTATKNAED  60
TAEFTSFSEC QSGDSKSSEK AQKPSSVLNA VSMQSSNMDY QGHFELGFGQ PLICAKYPYG  120
EKCLGLFSTV GSQLADRIML PLNLTSDEGP IFVNAKQYHG ILRRRKFRAK EMEKKVLKPR  180
KQFLHLSRHL HAMRRPRGCG GRFMNTRKMN GRVNGDTTYD TTKTGSQNSE VLQSDISNFN  240
SPTGRRSYNS SEVTSLYSRG NVETFPIHNP RPSVHSLLDM MNTGHDILMA SKWGPAADSC  300
CNLKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-15148208263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019254537.11e-135PREDICTED: nuclear transcription factor Y subunit A-10-like
RefseqXP_019254538.11e-135PREDICTED: nuclear transcription factor Y subunit A-10-like
RefseqXP_019254539.11e-135PREDICTED: nuclear transcription factor Y subunit A-10-like
TrEMBLA0A1J6I0091e-133A0A1J6I009_NICAT; Nuclear transcription factor y subunit a-2
STRINGPGSC0003DMT4000550611e-128(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.18e-43nuclear factor Y, subunit A2