PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

HD-ZIP

Protein Properties

Length: 842aa MW: 92744.7 Da PI: 6.1832

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf02234g00026.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	27	85	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Peinf101Scf02234g00026.1 27 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 85 56789****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.418	22	86	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.8E-16	23	88	IPR009057	Homeodomain-like
SMART	SM00389	1.0E-15	24	90	IPR001356	Homeobox domain
CDD	cd00086	4.79E-16	27	87	No hit	No description
Pfam	PF00046	6.6E-16	28	85	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.9E-18	29	85	IPR009057	Homeodomain-like
CDD	cd14686	4.87E-6	79	118	No hit	No description
PROSITE profile	PS50848	26.98	156	383	IPR002913	START domain
CDD	cd08875	2.37E-69	160	375	No hit	No description
Gene3D	G3DSA:3.30.530.20	4.5E-20	165	368	IPR023393	START-like domain
SMART	SM00234	8.8E-41	165	374	IPR002913	START domain
SuperFamily	SSF55961	9.89E-34	165	376	No hit	No description
Pfam	PF01852	4.9E-47	166	373	IPR002913	START domain
SuperFamily	SSF55961	1.87E-5	398	496	No hit	No description
SuperFamily	SSF55961	1.87E-5	531	596	No hit	No description
Pfam	PF08670	3.0E-47	697	841	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009855	Biological Process	determination of bilateral symmetry
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0009956	Biological Process	radial pattern formation
GO:0010014	Biological Process	meristem initiation
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010089	Biological Process	xylem development
GO:0030154	Biological Process	cell differentiation
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 842 aa Download sequence Send to blast
MAMVAQHHRE RESSSGSITK HLDSSGKYVR YTAEQVEALE RVYAECPKPS SLRRQQLIRE 60 CPILSNIEPK QIKVWFQNRR CREKQRKESS RLQTVNRKLS AMNKLLMEEN DRLQKQVSQL 120 VCENGYMRQQ LQSASAATTD VSCDSVVTTP QHSLRDANNP AGLLSIAEET LAEFLSKATG 180 TAVDWVPMPG MKPGPDSVGI FAISQSCSGV AARACGLVSL EPTKIAEILK DRPSWFRDCR 240 NVEVFTMFSA GNGTIELLYT QIYAPTTLAP ARDFWTLRYT TTLENGSLVV CERSLSGTGA 300 GPNAVAASQF VRAQMLPSGY LIRPCDGGGS IIHIVDHINL EAWSAPEILR PLYESSKVVA 360 QKMTIAALRY ARQIAQETSG EVVYGLGRQP AVLRTFSQRL NRGFNDAING FSDDGWSMLS 420 SDGAEDVIVA VNSRKNLPST SIPLSPLGGI LCAKASMLLQ NVPPAVLVRF LREHRSEWAD 480 FNVDAYVASA LKSCSYAYPG MRPTRFTGSQ IIMPLGHTIE HEEMLEVIRL EGHSISQEDA 540 FMPRDIHLLQ MCSGTDENAV GACSELVFAP IDEMFPDDAP LLPSGFRIIP LESKSSDTQD 600 TLNAHRTLDL ASSLEVGPAT NPATADVASC YRARSVLTIA FQFPFEENLQ DNVATMARQY 660 VRSVVSSVQR VAMAISPTGV NPSFGSKLSP GSPEAVTLSH WICQSYSFHL GTELLRDDSR 720 GSDESVLKNL WQHQDAILCC SLKSLPVLIF ANKAGLDMLE TTLVALQDIS LDKIFDESGR 780 KVLFSEFPKI MEQGFTYLPG GICMSAMGRH ISYEQAVAWK VFASEENTVH CLAFSFINWS 840 FV

Sequence ? help Back to Top

Protein Sequence Length: 842 aa Download sequence Send to blast

MAMVAQHHRE RESSSGSITK HLDSSGKYVR YTAEQVEALE RVYAECPKPS SLRRQQLIRE  60
CPILSNIEPK QIKVWFQNRR CREKQRKESS RLQTVNRKLS AMNKLLMEEN DRLQKQVSQL  120
VCENGYMRQQ LQSASAATTD VSCDSVVTTP QHSLRDANNP AGLLSIAEET LAEFLSKATG  180
TAVDWVPMPG MKPGPDSVGI FAISQSCSGV AARACGLVSL EPTKIAEILK DRPSWFRDCR  240
NVEVFTMFSA GNGTIELLYT QIYAPTTLAP ARDFWTLRYT TTLENGSLVV CERSLSGTGA  300
GPNAVAASQF VRAQMLPSGY LIRPCDGGGS IIHIVDHINL EAWSAPEILR PLYESSKVVA  360
QKMTIAALRY ARQIAQETSG EVVYGLGRQP AVLRTFSQRL NRGFNDAING FSDDGWSMLS  420
SDGAEDVIVA VNSRKNLPST SIPLSPLGGI LCAKASMLLQ NVPPAVLVRF LREHRSEWAD  480
FNVDAYVASA LKSCSYAYPG MRPTRFTGSQ IIMPLGHTIE HEEMLEVIRL EGHSISQEDA  540
FMPRDIHLLQ MCSGTDENAV GACSELVFAP IDEMFPDDAP LLPSGFRIIP LESKSSDTQD  600
TLNAHRTLDL ASSLEVGPAT NPATADVASC YRARSVLTIA FQFPFEENLQ DNVATMARQY  660
VRSVVSSVQR VAMAISPTGV NPSFGSKLSP GSPEAVTLSH WICQSYSFHL GTELLRDDSR  720
GSDESVLKNL WQHQDAILCC SLKSLPVLIF ANKAGLDMLE TTLVALQDIS LDKIFDESGR  780
KVLFSEFPKI MEQGFTYLPG GICMSAMGRH ISYEQAVAWK VFASEENTVH CLAFSFINWS  840
FV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269\|PubMed:10559440, ECO:0000269\|PubMed:11169198, ECO:0000269\|PubMed:11402186, ECO:0000269\|PubMed:15111711, ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:20807212, ECO:0000269\|PubMed:22781836, ECO:0000269\|PubMed:7555701}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269\|PubMed:15111711, ECO:0000269\|PubMed:17237362, ECO:0000269\|PubMed:20807212}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ686937	0.0	JQ686937.1 Nicotiana tabacum cultivar SR1 homeobox-leucine zipper protein revoulta (REV) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019255429.1	0.0	PREDICTED: homeobox-leucine zipper protein REVOLUTA
Swissprot	Q9SE43	0.0	REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBL	A0A1J6HUQ1	0.0	A0A1J6HUQ1_NICAT; Homeobox-leucine zipper protein revoluta
STRING	XP_009776589.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA457	24	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60690.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Lian H,Li X,Liu Z,He Y HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis. J. Exp. Bot., 2013. 64(11): p. 3397-410 [PMID:23918970] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Baima S, et al. Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module. Mol Plant, 2014. 7(6): p. 1006-1025 [PMID:24777988] Jia X, et al. Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic. Plant Sci., 2015. 233: p. 11-21 [PMID:25711809] Roodbarkelari F,Du F,Truernit E,Laux T ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response. BMC Biol., 2015. 13: p. 74 [PMID:26358077] Shi B, et al. Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis. PLoS Genet., 2016. 12(7): p. e1006168 [PMID:27398935]