PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02234g00021.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ARF
Protein Properties Length: 700aa    MW: 77328.7 Da    PI: 8.2872
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02234g00021.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.22.7e-22115216199
                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                               f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD
  Peinf101Scf02234g00021.1 115 FAKTLTQSDANNGGGFSVPRYCAETIfpkldytADPPVQ--TVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGD 197
                               89****************************997555555..8******************************************* PP

                               EEEEEE-SSSEE..EEEEE-S CS
                        B3  79 fvvFkldgrsefelvvkvfrk 99 
                                +vF +     + l+v+++r+
  Peinf101Scf02234g00021.1 198 AIVFLR--AILGDLCVGIRRA 216
                               ****93..3556678888875 PP
2Auxin_resp115.45.1e-38275358183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                               aa  a+++++FevvY+Pra t+eF+v+++ v++a++++++ GmRfkmafetedss++++ +Gt+++++ +dp++WpnS+Wr+L+
  Peinf101Scf02234g00021.1 275 AAYLAASGQPFEVVYYPRANTPEFCVRASTVNTAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSIQVADPIHWPNSPWRLLQ 358
                               577899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.19E-29110216IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-36110222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-20114215No hitNo description
PROSITE profilePS5086312.294115217IPR003340B3 DNA binding domain
PfamPF023622.4E-20115216IPR003340B3 DNA binding domain
SMARTSM010191.3E-20115217IPR003340B3 DNA binding domain
PfamPF065072.9E-33275358IPR010525Auxin response factor
PROSITE profilePS5174516.815588668IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MKEVLEKCVD SQLWHACAGG MVQIPKVNSK VYYFPQGHAE HTLMNVDFST LPVRIPALIL  60
CRVAAVKFLA DAETDEVYAR IRLVPIGNEG NEFDDDNVLG SNNELGTDDN KPTSFAKTLT  120
QSDANNGGGF SVPRYCAETI FPKLDYTADP PVQTVIAKDV HGETWKFRHI YRGTPRRHLL  180
TTGWSSFVNQ KKLVAGDAIV FLRAILGDLC VGIRRAKRGG IGGPETPSGW NSASGNYGGF  240
SAFLREDINK NGNLNSSGGT FRGKGRVRPE SVLEAAYLAA SGQPFEVVYY PRANTPEFCV  300
RASTVNTAMR IQWCSGMRFK MAFETEDSSR ISWFMGTISS IQVADPIHWP NSPWRLLQVT  360
WDEPDLLQNV KHVSPWLVEL VSNMPVIHLS PFSPPRKKLR LPPDFSIDGQ FPLPSFSGNP  420
LRSSSPFCCL SDNTTAGIQG ARHAQYGVPL LDLHLSNKVH SGLLPPNFQR VAADSKLPYD  480
INKGQNDRND NISCLLTMGI SSQMLEKTDS VKTPRFLLFG QPILTEQQIS NGCSTNAPEV  540
QTGRYSGRIQ LKKQRFPPEQ KGLRDSLSSA TFLWNQGYHA TAELGVDTGH CKVFLESEDV  600
GRTLDLSVLG SYEELYRRLA NMFGLERSDM LSRVLYHDAT GAVKQTGDEP FSVFVKNAKR  660
LTILMNPSSS NIERKWITGL PSAGRGLDSS NQAGPLSIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-79937951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234295.10.0PREDICTED: auxin response factor 18-like
RefseqXP_019234296.10.0PREDICTED: auxin response factor 18-like
RefseqXP_019234297.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1J6KPQ10.0A0A1J6KPQ1_NICAT; Auxin response factor
STRINGXP_009602946.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]