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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02138g02031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | SBP | ||||||||
Protein Properties | Length: 185aa MW: 20888.4 Da PI: 9.1093 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 136.4 | 8.8e-43 | 73 | 150 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C +dls ak+yh+rhkvCevh+kap vlv+gl+qrfCqqCsrfhelsefD +krsCrrrLa+hnerrrk+++ Peinf101Scf02138g02031.1 73 CCQVEKCGTDLSYAKTYHKRHKVCEVHAKAPIVLVAGLRQRFCQQCSRFHELSEFDGTKRSCRRRLAGHNERRRKTSQ 150 6**************************************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.9E-35 | 67 | 135 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.248 | 71 | 148 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.89E-39 | 72 | 151 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-33 | 74 | 147 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MFNFKKSMAT YNHAATRDLA DEGEDTEVED EEDEGLELID DKSRLKRKKL NLAKGAVKEG 60 ANSYGGGGVA QPCCQVEKCG TDLSYAKTYH KRHKVCEVHA KAPIVLVAGL RQRFCQQCSR 120 FHELSEFDGT KRSCRRRLAG HNERRRKTSQ GTKLEDNQCR QINGEGTPKL TFSSSNTSLK 180 NYQIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-35 | 74 | 147 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT717964 | 1e-122 | KT717964.1 Petunia x hybrida squamosa promoter-binding protein 2 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009788885.1 | 1e-66 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_016481940.1 | 1e-66 | PREDICTED: squamosa promoter-binding-like protein 3 | ||||
Swissprot | Q38740 | 3e-46 | SBP2_ANTMA; Squamosa promoter-binding protein 2 | ||||
TrEMBL | A0A2K9ZXH7 | 1e-106 | A0A2K9ZXH7_PETHY; Squamosa promoter binding-like protein 4c | ||||
STRING | XP_009788885.1 | 5e-66 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA749 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 1e-40 | squamosa promoter binding protein-like 4 |
Publications ? help Back to Top | |||
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