PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02093g03017.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HSF
Protein Properties Length: 378aa    MW: 43950.3 Da    PI: 4.7682
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02093g03017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.14.3e-36411332103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               F++k+ye+++d+++++++sws  +nsf+v+d+e+fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F
  Peinf101Scf02093g03017.1  41 FITKTYELVDDPNTNNIVSWSGGNNSFIVWDPETFAINLLPRYFKHNNFSSFVRQLNTYGFRKVNPDQ---------WEFANEGF 116
                               9********************999*****************************************999.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                                +g+++ll++i+r+k++
  Peinf101Scf02093g03017.1 117 LRGQRHLLKTIRRRKTS 133
                               **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.4E-3834125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-5937130IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.45E-3637130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-194164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-3141130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-1992104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDPFASIKEE FPAGSNYETS SFMWINPQPM EGLHETGPPP FITKTYELVD DPNTNNIVSW  60
SGGNNSFIVW DPETFAINLL PRYFKHNNFS SFVRQLNTYG FRKVNPDQWE FANEGFLRGQ  120
RHLLKTIRRR KTSNFHPGQA SNQGIDSYNI ELGKLELDGE IDRLRHEKQV LMKELVKLRQ  180
DQQTTKSYIK AMEEKLKRTE VKQQQMMKFL AKAMQNPRFL EQMMQQKERK KLELEEEIRK  240
KRRRPIIDQA GPSNSNVGVR ELGHGVNDGN INNIKLEPQE YYGDQICGFY DFELERLAMS  300
MQRPSGSTIN LEEDYNIENK DMGKLGSENK AIDEGFWEDL LDENVEDEMT LLGFEGEDEE  360
EDVDVLAQQL GFLGSRPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-263913318123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228243RKKLELEEEIRKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-128HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009797496.10.0PREDICTED: heat stress transcription factor A-6b-like
RefseqXP_009797497.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-124HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1U7Y6B50.0A0A1U7Y6B5_NICSY; heat stress transcription factor A-6b-like
STRINGXP_009797496.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-109heat shock transcription factor A6B