PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02091g01031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 85aa MW: 9709 Da PI: 6.6783 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19 | 2.5e-06 | 16 | 52 | 18 | 54 |
HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + ++L++ lP+ + +s K s + +L+++++YI++L Peinf101Scf02091g01031.1 16 ELVSKLQQFLPEiR-TRRSNKASASKVLQETCNYIRDL 52 56689*******77.799999***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.07 | 1 | 52 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-7 | 13 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.45E-7 | 14 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MSSRRSSRIS DDQIIELVSK LQQFLPEIRT RRSNKASASK VLQETCNYIR DLNREVDDLS 60 DRLSQLLSTI DADSPEAAII RSLIM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016559055.1 | 3e-46 | PREDICTED: transcription factor PRE6-like | ||||
Swissprot | Q9LJX1 | 2e-38 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | A0A1U8FK00 | 7e-45 | A0A1U8FK00_CAPAN; Transcription factor PRE5 | ||||
TrEMBL | A0A2G2XD16 | 7e-45 | A0A2G2XD16_CAPBA; Transcription factor PRE5 | ||||
TrEMBL | A0A2G3A645 | 7e-45 | A0A2G3A645_CAPAN; transcription factor PRE6-like | ||||
STRING | Solyc02g067380.2.1 | 7e-45 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400017748 | 6e-45 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA353 | 24 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39860.1 | 7e-26 | bHLH family protein |