PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02052g00016.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NF-YA
Protein Properties Length: 310aa    MW: 33941.1 Da    PI: 7.2926
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02052g00016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.61.1e-29168224158
                 CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                               +ep+YVNaKQy+rIl+RRq+Rak+e e+k  +k+rkpylheSRh+hA+rR+R+sgGrF
  Peinf101Scf02052g00016.1 168 QEPVYVNAKQYRRILQRRQSRAKAELERKQ-IKARKPYLHESRHQHAMRRARASGGRF 224
                               69*************************999.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-31166227IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.105167227IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.1E-25169224IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.6E-23170192IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.6E-23201224IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MTSNSKSEKG VEANAYNGPR SAAYSEPWWN TAGYNPVSPG MMRGNASDSS SLEQSMDGQS  60
QSDGGINEED DEAPEKAQST VPLHADRSYG QVDQNFQPAA LTMPPTLDGS VTQPQQLELV  120
GHSIACAPNP YVDPYYGGMM TAFGQPMVPP HVLDMHYARM PLPQEMAQEP VYVNAKQYRR  180
ILQRRQSRAK AELERKQIKA RKPYLHESRH QHAMRRARAS GGRFARKTDG DASKGTGSGS  240
AFSSQSVSSS GSEPLQFNAA DVQKRQENGR LAELQHSYSN GSSYGNQSSF QESKDESQSA  300
ESREGGSLRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-18168240274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4897590.0AM489759.1 Petunia x hybrida partial mRNA for YA4 (nf-YA gene).
GenBankBT0141460.0BT014146.1 Lycopersicon esculentum clone 133265F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251747.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like
TrEMBLA0A1J6I1Z60.0A0A1J6I1Z6_NICAT; Nuclear transcription factor y subunit a-1
STRINGXP_009767513.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31112248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.39e-46nuclear factor Y, subunit A1