PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf02016g03008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ERF | ||||||||
Protein Properties | Length: 146aa MW: 16274.3 Da PI: 8.4143 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.6 | 2.8e-17 | 16 | 66 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+G+r++k +g+Wv+eIr+p g r r +lg++ t+e Aa a++ a +l+ Peinf101Scf02016g03008.1 16 KKYRGIRRRK-WGKWVSEIRVP---GSRDRLWLGTYTTPEAAAVAHDIAYYCLRE 66 59*****998.**********8...435***********************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.75E-25 | 16 | 76 | No hit | No description |
PROSITE profile | PS51032 | 21.549 | 17 | 76 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.5E-26 | 17 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-26 | 17 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-9 | 17 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-17 | 17 | 77 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.0E-9 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-9 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MSSSDEGGIN TSAHQKKYRG IRRRKWGKWV SEIRVPGSRD RLWLGTYTTP EAAAVAHDIA 60 YYCLRESSSL DKLNFPLMLP VGIERGMSPR SVQKKASDAG MAIDAQLVTS YPAGRGTQQE 120 MSDHAYQSVD NVQNEALSIS VEDYLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-15 | 5 | 82 | 2 | 78 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00158 | DAP | Transfer from AT1G22810 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009767328.1 | 4e-85 | PREDICTED: ethylene-responsive transcription factor ERF020-like | ||||
Refseq | XP_016443781.1 | 4e-85 | PREDICTED: ethylene-responsive transcription factor ERF020-like | ||||
Swissprot | O80542 | 2e-45 | ERF19_ARATH; Ethylene-responsive transcription factor ERF019 | ||||
TrEMBL | A0A1S3XV09 | 9e-84 | A0A1S3XV09_TOBAC; ethylene-responsive transcription factor ERF020-like | ||||
TrEMBL | A0A1U7VLT9 | 9e-84 | A0A1U7VLT9_NICSY; ethylene-responsive transcription factor ERF020-like | ||||
STRING | XP_009767328.1 | 1e-84 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9494 | 20 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22810.1 | 6e-48 | ERF family protein |
Publications ? help Back to Top | |||
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