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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Peinf101Scf02008g05008.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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| Family |
NF-YC |
| Protein Properties |
Length: 242aa MW: 26106.4 Da PI: 5.0294 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Peinf101Scf02008g05008.1 | genome | SGN | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 178 | 9.2e-56 | 45 | 149 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82
ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa
Peinf101Scf02008g05008.1 45 QLQMFWTYQrqeIESVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAA 129
89*****998889************************************************************************ PP
NF-YC 83 vtrtdifdflvdivprdelk 102
+trtdifdflvdivprde+k
Peinf101Scf02008g05008.1 130 ITRTDIFDFLVDIVPRDEIK 149
*****************975 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009738 | Biological Process | abscisic acid-activated signaling pathway |
| GO:0010468 | Biological Process | regulation of gene expression |
| GO:0048586 | Biological Process | regulation of long-day photoperiodism, flowering |
| GO:0051247 | Biological Process | positive regulation of protein metabolic process |
| GO:2000905 | Biological Process | negative regulation of starch metabolic process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005829 | Cellular Component | cytosol |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 242 aa
Download sequence Send
to blast |
MENTNNNPQQ SAANAAAAAA AAAAAGGAYP TQPPYHHLLQ QQQQQLQMFW TYQRQEIESV 60
NDFKNHQLPL ARIKKIMKAD EDVRMISAEA PILFAKACEL FILELTIRSW LHAEENKRRT 120
LQKNDIAAAI TRTDIFDFLV DIVPRDEIKE EGGVAVGIGG VGGLVGPGGL MGSTASGVPY 180
YYPPMGQPAP PPGGVMMGRP AGMDPSMYVQ PQPSQAWQSV WQTNEDNSYA SGGSSGHGNL 240
DG
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
| Publications
? help Back to Top |
- Hwang YH, et al.
Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
Plant Cell Rep., 2016. 35(4): p. 857-65
[PMID:26754793] - Liu X, et al.
The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
Nat Commun, 2016. 7: p. 12768
[PMID:27624486] - Myers ZA, et al.
NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
PLoS Genet., 2016. 12(9): p. e1006333
[PMID:27685091] - Tang Y, et al.
Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
Mol Plant, 2017. 10(2): p. 260-273
[PMID:27876642] - Zhao H, et al.
The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
Front Plant Sci, 2016. 7: p. 2045
[PMID:28119722] - Qi M, et al.
QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.
Plant Biotechnol. J., 2019. 17(1): p. 252-263
[PMID:29878511]
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