PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01941g01043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C3H | ||||||||
Protein Properties | Length: 125aa MW: 13880.5 Da PI: 8.3592 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.8 | 5.7e-11 | 59 | 81 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f rtG+C+yGd+Ck+ H++ Peinf101Scf01941g01043.1 59 VCNHFVRTGYCQYGDSCKYYHPK 81 7********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 2.8E-4 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 2.38E-15 | 4 | 48 | No hit | No description |
Pfam | PF06220 | 8.2E-10 | 5 | 38 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 14.962 | 54 | 82 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-7 | 55 | 81 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.16E-7 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-5 | 56 | 81 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-8 | 58 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MPVGKYYCDY CDKEFQDTAA ARKRHLQGVQ HQRAKALWYN SLSNPQLCND PNAFGKKGVC 60 NHFVRTGYCQ YGDSCKYYHP KQNSQTVNQI GPPPGTNVRE GDMFGENAAA SLGNLPPSLQ 120 PPPEG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006344810.1 | 2e-70 | PREDICTED: zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q0JP11 | 3e-36 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A2G3AVE0 | 1e-70 | A0A2G3AVE0_CAPCH; Uncharacterized protein | ||||
STRING | Solyc01g100990.2.1 | 2e-69 | (Solanum lycopersicum) | ||||
STRING | XP_009615870.1 | 2e-69 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12008 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 6e-37 | C3H family protein |
Publications ? help Back to Top | |||
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