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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Peinf101Scf01933g07027.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family |
Trihelix |
Protein Properties |
Length: 334aa MW: 37267.3 Da PI: 7.9476 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Peinf101Scf01933g07027.1 | genome | SGN | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 68.9 | 9.7e-22 | 126 | 222 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlr.rgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73
+Wt++ v++Li+++ ++++ + +g+ +kk++W+ vs+ m + g+++sp+qC++k+++lnkrykk++++ +++ ++
Peinf101Scf01933g07027.1 126 KWTDNVVRLLIQVVACVGDDGSlEGSeglkrksgciQKKGKWKTVSRIMLSNGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSC 210
7**************777777743334566667889**********************************************558 PP
trihelix 74 essstcpyfdql 85
++++ ++ d++
Peinf101Scf01933g07027.1 211 AVVENPVLMDSM 222
899888888877 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Pfam | PF13837 | 6.4E-18 | 124 | 214 | No hit | No description |
Sequence ? help Back to Top |
Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MSSSGMGGGF LSGYNGGFLG MNMLQQPQSN SNNAAHGHPT SHNNVQSSMN TRLGLENDKP 60 IGLMDVKDCM AFGKDKAAGP SNAVNNCNNP INNTSDEDEP SFTEDGNCDN GAVAQGKKGS 120 PWQRMKWTDN VVRLLIQVVA CVGDDGSLEG SEGLKRKSGC IQKKGKWKTV SRIMLSNGCH 180 VSPQQCEDKF NDLNKRYKKL NDILGRGTSC AVVENPVLMD SMPQLSAKAK ETWEQKIWIK 240 KRMLQLEEEK VGIQAEALEL EKRQFKWQRF CRKKDRELEM ERLENEKLIL ENEHMALQLK 300 HKELELDSKK PNISFNSAPL SIDRPLGRDQ IDAA
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G21200.1 | 4e-49 | sequence-specific DNA binding transcription factors |