PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01913g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 122aa MW: 13412.9 Da PI: 10.6319 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.3 | 3.7e-05 | 10 | 29 | 37 | 55 |
-.STCHHHHHHHHHHHHHHH CS HLH 37 K.lsKaeiLekAveYIksLq 55 K +Ka++L +++eY+k+Lq Peinf101Scf01913g00005.1 10 KsTNKASMLDEVIEYMKQLQ 29 449****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.82E-4 | 10 | 33 | No hit | No description |
SuperFamily | SSF47459 | 1.02E-5 | 10 | 45 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-6 | 11 | 37 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MWSYCSKAIK STNKASMLDE VIEYMKQLQA QVQAMSNTII YPMMLPVAVQ QQLQMSMMAP 60 AMRMRMAALI RPSAAARPAV LHPTASFMPI SPRGRVNDAS TAAVVPNSLS TFQSQVLLTF 120 TS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012083633.1 | 4e-19 | transcription factor UNE10 | ||||
Refseq | XP_015582839.1 | 4e-19 | transcription factor UNE10 | ||||
TrEMBL | B9RD58 | 8e-18 | B9RD58_RICCO; DNA binding protein, putative | ||||
STRING | XP_002511647.1 | 1e-18 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15785 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 4e-09 | bHLH family protein |