PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01889g14023.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 439aa MW: 49951.3 Da PI: 6.5682

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01889g14023.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.7	9.7e-39	145	244	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 aCaaCk++rrkCa+dCvlapyfp++++++f n+hklFG+sn++k++++l++ +++am+++++++++ra+dPv G++++i++lq+ Peinf101Scf01889g14023.1 145 ACAACKYQRRKCAPDCVLAPYFPHDRQRQFLNAHKLFGVSNITKIIRHLDQPLKDEAMRTIIFQSDVRANDPVGGCYRIIRDLQR 229 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 +++ kael+ + ++ Peinf101Scf01889g14023.1 230 HIDYCKAELDIVLHQ 244 *******988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.198	144	245	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-36	145	240	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MKVHPVGARK RNITLRYDIV SQSNTLTTTT GGRQKKLRRL PHIFAKVLEL PFHSDADVSI 60 QETPDSLRFI IQTDDDDEFE NNNNIRAHTV EIYPGVTKIH PIPNHHHNTH AFTPANNNLN 120 HNYTKHANNN NNNKNLLLRV SGAQACAACK YQRRKCAPDC VLAPYFPHDR QRQFLNAHKL 180 FGVSNITKII RHLDQPLKDE AMRTIIFQSD VRANDPVGGC YRIIRDLQRH IDYCKAELDI 240 VLHQLAYCRA QAVAAAASEQ QQILADHATE ESFNDNNCDG VVNQADNLVN NTSSYEQPID 300 YQPHSYYIHP RCQQADDQQY DDLQDGHLDL ADINFSWSLH EQESTSTSTP AVINQPSVHD 360 QCDNIKPILE EISGYAEEGL SFEHEQTFDQ SIVLTVVHSH DNEATQRGNR VPLKEEDKSF 420 PHARRSRSKG AATLFTFTN

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MKVHPVGARK RNITLRYDIV SQSNTLTTTT GGRQKKLRRL PHIFAKVLEL PFHSDADVSI  60
QETPDSLRFI IQTDDDDEFE NNNNIRAHTV EIYPGVTKIH PIPNHHHNTH AFTPANNNLN  120
HNYTKHANNN NNNKNLLLRV SGAQACAACK YQRRKCAPDC VLAPYFPHDR QRQFLNAHKL  180
FGVSNITKII RHLDQPLKDE AMRTIIFQSD VRANDPVGGC YRIIRDLQRH IDYCKAELDI  240
VLHQLAYCRA QAVAAAASEQ QQILADHATE ESFNDNNCDG VVNQADNLVN NTSSYEQPID  300
YQPHSYYIHP RCQQADDQQY DDLQDGHLDL ADINFSWSLH EQESTSTSTP AVINQPSVHD  360
QCDNIKPILE EISGYAEEGL SFEHEQTFDQ SIVLTVVHSH DNEATQRGNR VPLKEEDKSF  420
PHARRSRSKG AATLFTFTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-24	142	239	7	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-24	142	239	7	105	LOB family transfactor Ramosa2.1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019228565.1	1e-156	PREDICTED: LOB domain-containing protein 22-like
TrEMBL	A0A1S3XPA6	1e-152	A0A1S3XPA6_TOBAC; LOB domain-containing protein 22-like
STRING	XP_009623735.1	1e-155	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9926	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	4e-50	LOB domain-containing protein 22