PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf01889g14023.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 439aa MW: 49951.3 Da PI: 6.5682 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.7 | 9.7e-39 | 145 | 244 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 aCaaCk++rrkCa+dCvlapyfp++++++f n+hklFG+sn++k++++l++ +++am+++++++++ra+dPv G++++i++lq+ Peinf101Scf01889g14023.1 145 ACAACKYQRRKCAPDCVLAPYFPHDRQRQFLNAHKLFGVSNITKIIRHLDQPLKDEAMRTIIFQSDVRANDPVGGCYRIIRDLQR 229 7************************************************************************************ PP DUF260 86 qleqlkaelallkee 100 +++ kael+ + ++ Peinf101Scf01889g14023.1 230 HIDYCKAELDIVLHQ 244 *********988776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.198 | 144 | 245 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-36 | 145 | 240 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 439 aa Download sequence Send to blast |
MKVHPVGARK RNITLRYDIV SQSNTLTTTT GGRQKKLRRL PHIFAKVLEL PFHSDADVSI 60 QETPDSLRFI IQTDDDDEFE NNNNIRAHTV EIYPGVTKIH PIPNHHHNTH AFTPANNNLN 120 HNYTKHANNN NNNKNLLLRV SGAQACAACK YQRRKCAPDC VLAPYFPHDR QRQFLNAHKL 180 FGVSNITKII RHLDQPLKDE AMRTIIFQSD VRANDPVGGC YRIIRDLQRH IDYCKAELDI 240 VLHQLAYCRA QAVAAAASEQ QQILADHATE ESFNDNNCDG VVNQADNLVN NTSSYEQPID 300 YQPHSYYIHP RCQQADDQQY DDLQDGHLDL ADINFSWSLH EQESTSTSTP AVINQPSVHD 360 QCDNIKPILE EISGYAEEGL SFEHEQTFDQ SIVLTVVHSH DNEATQRGNR VPLKEEDKSF 420 PHARRSRSKG AATLFTFTN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-24 | 142 | 239 | 7 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-24 | 142 | 239 | 7 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019228565.1 | 1e-156 | PREDICTED: LOB domain-containing protein 22-like | ||||
TrEMBL | A0A1S3XPA6 | 1e-152 | A0A1S3XPA6_TOBAC; LOB domain-containing protein 22-like | ||||
STRING | XP_009623735.1 | 1e-155 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9926 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13850.1 | 4e-50 | LOB domain-containing protein 22 |