PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01889g13052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 212aa MW: 24059.4 Da PI: 8.8063 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.2 | 6.9e-09 | 122 | 162 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++++P K++ a++L +A +Y+k L Peinf101Scf01889g13052.1 122 ARQRRERISEKIKILQKMVPGG-----SKMDTASMLDEAANYLKFL 162 69******************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.008 | 113 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.13E-14 | 118 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 119 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.97E-11 | 119 | 167 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-12 | 121 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-6 | 122 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MDTLDWDTMP IIRNSSSSFD PIDMISSWNI CQRQEAATRL VADSVAAKSR KCPSSESSNI 60 NFQQASSSTS SLDEPDSEAI AQMKEMIYRD AAFKPVACST DEVQKPKRKN VRISTDPQTV 120 AARQRRERIS EKIKILQKMV PGGSKMDTAS MLDEAANYLK FLRTQVKELE AFGYKINPLI 180 TNFSPLYSIP FNNYPFFMQH NFPLNSIHRL MS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 127 | RQRRER |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016443824.1 | 4e-66 | PREDICTED: transcription factor bHLH87-like | ||||
Swissprot | Q8S3D2 | 3e-55 | BH087_ARATH; Transcription factor bHLH87 | ||||
TrEMBL | A0A1S3XVC1 | 1e-64 | A0A1S3XVC1_TOBAC; transcription factor bHLH87-like | ||||
STRING | Solyc06g062460.2.1 | 5e-65 | (Solanum lycopersicum) | ||||
STRING | XP_009625228.1 | 5e-65 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4350 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 1e-56 | bHLH family protein |
Publications ? help Back to Top | |||
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