PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01889g04044.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family AP2
Protein Properties Length: 295aa    MW: 33701.2 Da    PI: 9.1305
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01889g04044.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.96e-094397155
                       AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                              s y+GV+  +++gr++A+++d  ++n  ++ k  + g +  +e Aa a++ a++k++g
  Peinf101Scf01889g04044.1 43 SIYRGVT--RWTGRYEAHLWDkNCWNEtQNkKGRQ-GAYVDEEAAAHAYDLAALKYWG 97
                              579***7..48**********99998898845555.555555**************98 PP
2AP225.92.4e-08140173137
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfg 37 
                               s+y+GV +++ +grW+A+I   +   g +k+ +lg++ 
  Peinf101Scf01889g04044.1 140 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYE 173
                               79****99**********99966...3.6********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-1243107IPR016177DNA-binding domain
PROSITE profilePS5103215.10644105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1044106IPR001471AP2/ERF domain
SMARTSM003802.4E-1444111IPR001471AP2/ERF domain
CDDcd000185.16E-11140186No hitNo description
PfamPF008471.5E-4140173IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-6140185IPR016177DNA-binding domain
PROSITE profilePS510328.953141173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-4141175IPR001471AP2/ERF domain
SMARTSM003802.1E-5141190IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAKNQKNTSS SNSSDHKNKE NDMSKGKRKR KSLPKDSPQQ RSSIYRGVTR WTGRYEAHLW  60
DKNCWNETQN KKGRQGAYVD EEAAAHAYDL AALKYWGQDT ILNFPLSTYE KELKEMEGQS  120
KEEYIGSLRR KSSGFSRGVS RYRGVARHHH NGRWEARIGR VFGNKYLYLG TYEHRGLNAV  180
TNFDLSRYIN NPSNPQVPNL NPNPNDPSPM PATTKEIKFS FLHHHHQSSN TVETTVSPPC  240
PASDTTASYA LGLFPDDIQT YFDSQDSSSF IKKHDIVFGD LDSFVSTMFE CELET
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248140.11e-136PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN43e-97AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A385CI971e-179A0A385CI97_PETHY; BasalANT AP2/ERF family transcription factor
STRINGXP_009757386.11e-134(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2516922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.24e-95AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]