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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01853g07028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 139aa MW: 15323 Da PI: 4.0647 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.8 | 4.3e-07 | 14 | 44 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIart 30 rg+W+++Ed l++ v++ G+g +W + +++ Peinf101Scf01853g07028.1 14 RGPWSPDEDNTLKNFVEKNGTGgNWIALPQK 44 89********************999777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-9 | 5 | 44 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.934 | 9 | 55 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.11E-5 | 9 | 45 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.1E-6 | 14 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00291 | 16 | 40 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MGRAPCCDKT KVKRGPWSPD EDNTLKNFVE KNGTGGNWIA LPQKAEMLNV ESSCQFPLPG 60 LMEIQENGAI TTLQEDGNYL MDFSSGISST YYDILNGFDF QEKAITADPN CSSSSCSTLV 120 QQQGYISDID QYPFKGVEN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 3e-38 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. | |||
GenBank | HG975524 | 3e-38 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009620040.1 | 1e-25 | PREDICTED: transcription factor RAX2-like | ||||
Refseq | XP_016474887.1 | 1e-25 | PREDICTED: transcription factor RAX2-like | ||||
Refseq | XP_016541166.1 | 1e-25 | PREDICTED: transcription factor MYB36-like | ||||
TrEMBL | A0A1S4ADY4 | 3e-24 | A0A1S4ADY4_TOBAC; transcription factor RAX2-like | ||||
TrEMBL | A0A1U8E422 | 3e-24 | A0A1U8E422_CAPAN; transcription factor MYB36-like | ||||
TrEMBL | A0A2G2X3R5 | 2e-24 | A0A2G2X3R5_CAPBA; Myb-related protein Myb4 | ||||
TrEMBL | A0A2G2YUZ8 | 2e-24 | A0A2G2YUZ8_CAPAN; Myb-related protein Myb4 | ||||
TrEMBL | A0A2G3BNU1 | 3e-24 | A0A2G3BNU1_CAPCH; Myb-related protein Myb4 | ||||
STRING | XP_009620040.1 | 5e-25 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA25474 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 2e-23 | MYB family protein |