PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01853g02013.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NF-YA

Protein Properties

Length: 281aa MW: 31372.1 Da PI: 9.2351

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01853g02013.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.3	4.6e-32	142	198	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh hA++R Rg+gGrF Peinf101Scf01853g02013.1 142 DGPIYVNAKQYNGILRRRQIRAKLEAQNKL-VKNRKPYLHESRHLHAVNRVRGTGGRF 198 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	4.5E-36	140	201	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.76	141	201	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.3E-27	144	198	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.2E-22	144	166	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	146	166	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.2E-22	175	198	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
GIQSLASEVE FPSPCYQEMK SLDSDLQGEK LQLTHSAMSS KHEMTVLVKT NSQDQCASSE 60 YVHDERYGRD MQAQKKPAFF RNPDYSTSSL QIEVAHSIGF SPVGYSDPYM SGLYTAYGPQ 120 AFPQVMGIVP ARVPLPLEVA EDGPIYVNAK QYNGILRRRQ IRAKLEAQNK LVKNRKPYLH 180 ESRHLHAVNR VRGTGGRFLS TKKGHHSDPI TPTNSTSSRD SVEREGSTSA FSSVRQDVHN 240 GISFQQPDHR AFNVSSHMDV TMQDRGGFTC NGTQQRAPVV R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-20	144	209	4	72	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM489760	0.0	AM489760.1 Petunia x hybrida partial mRNA for YA5 (nf-YA gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019246887.1	1e-150	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
Refseq	XP_019246888.1	1e-150	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBL	A0A1J6IS46	1e-149	A0A1J6IS46_NICAT; Nuclear transcription factor y subunit a-3
STRING	XP_009761217.1	1e-143	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5009	23	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	5e-40	nuclear factor Y, subunit A3