PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01836g08005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 271aa MW: 30456.8 Da PI: 7.9451 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.7 | 5.7e-33 | 48 | 106 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++v YkeClkNhAas+GghavDGCgEfmps++ + ++++++kCaACgCHRnFHRre++e Peinf101Scf01836g08005.1 48 TAVIYKECLKNHAASIGGHAVDGCGEFMPSSDFSqSNPTSFKCAACGCHRNFHRREPAE 106 6799**************************998889*******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.4E-28 | 50 | 104 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-22 | 50 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.575 | 52 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.2E-30 | 52 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE pattern | PS00028 | 0 | 90 | 113 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF46689 | 2.43E-19 | 144 | 215 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 147 | 216 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.6E-24 | 154 | 211 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MDLTCIPTPT KTPDSDNDTP PHTTQPLKPL SFINGKHHQL HHQQPPCTAV IYKECLKNHA 60 ASIGGHAVDG CGEFMPSSDF SQSNPTSFKC AACGCHRNFH RREPAEDHFS TTHFIDFRHH 120 ILPPIRRYSP SPSPSPPPQP QPVTPKAEFN SSGRKRFRTK FTQEQKDKMY TFSEKLGWKM 180 QKCDEVMVDE FCNEVGVGKS VLRVWMHNNK NTFSKKDLQN TNHSDNNSDK NNINGFNING 240 TSSNEDHHNN NDTSNCGLQL HISTNGSCSS S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-22 | 155 | 212 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019229999.1 | 1e-121 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LXG0 | 1e-58 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A314KKG8 | 1e-120 | A0A314KKG8_NICAT; Zinc-finger homeodomain protein 9 | ||||
STRING | XP_009788342.1 | 1e-117 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 5e-61 | homeobox protein 30 |
Publications ? help Back to Top | |||
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