PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01804g00027.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 383aa    MW: 42271.8 Da    PI: 5.4561
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01804g00027.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.54.3e-0896174190
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               +f++e+A++ GFsv+k++ kk   +g++ +  f C ++ k+++++++          +r++C a ++    kdg+   +++ ++H
  Peinf101Scf01804g00027.1  96 EFFKEHARSKGFSVVKRSRKKD-VSGRVSNVLFSCDMSRKSTSKNRT----------KRIQCPAIVTGIVGKDGNCIDSTVCTNH 169
                               6**************9987776.8999**********9998887665..........9999999998888878888778888999 PP

                      FAR1  86 nHela 90 
                                Hel 
  Peinf101Scf01804g00027.1 170 FHELD 174
                               99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF085101.5E-32263380IPR013717PIG-P
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MESNSTDMNT TNIDTLNNVL GLSQDDSLLN EGVEMSISSG GNFSSGMDVD GVGEHTSSEG  60
CSDGEQKETA DQFTEEDLLV CPRPGMLFSS AVSMFEFFKE HARSKGFSVV KRSRKKDVSG  120
RVSNVLFSCD MSRKSTSKNR TKRIQCPAIV TGIVGKDGNC IDSTVCTNHF HELDPSLSRL  180
MAGHRSMDRS LERTLIAQDK AGLKVSKNIR VVQVLSGWED PRSVNSPRRI LSFSKNRKAT  240
VFFPDSDDRG SGFGVSGDQG PKTSEVYGFV GSITTVVATV LFLVWAYLPE KWLHSLGIVY  300
YPSRYWALAV PAYAMMTIVL AIGFYIGLNF LATPPPTSFS MIYDEFTREP LTSCPSIDDD  360
EQPIEPISDI RIDHINNLMF NPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0132580.0BT013258.1 Lycopersicon esculentum clone 134793F, mRNA sequence.