PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf01769g01012.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 268aa MW: 29898.2 Da PI: 5.8481

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf01769g01012.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19	2.5e-06	2	34	19	55
HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +f+ Lr+l+P+ ++K + a+ L ++++Y+++Lq Peinf101Scf01769g01012.1 2 RFQILRDLIPHT----DQKRDTASFLLEVIQYVQYLQ 34 79*******8....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.89	1	33	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.01E-5	1	38	No hit	No description
SuperFamily	SSF47459	5.37E-9	2	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-11	2	52	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MRFQILRDLI PHTDQKRDTA SFLLEVIQYV QYLQEKVQKY EGSYQPWSSE PTKLMPWRKS 60 HWRMQSLPAH PQALKNGTGP ESTYLGRFDE NAATVTSTMQ PNQQNAIESH PSRDISFKAM 120 DQHNELANKA ITTPMPLQAG VPVPLPNNSA FSDSQPRPLS DECRDTVDAM NHHEDLTVDG 180 GTISISSPYS QGLLDSLTEA LQSAGLDLSQ ATISVQINFG KRANRGMTSG ASSAKDNENT 240 PTTGNQHMDF REANSDEDLD RAQKRLKI

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019247319.1	1e-172	PREDICTED: transcription factor BIM2
Swissprot	Q9CAA4	2e-75	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A1J6ITG6	1e-170	A0A1J6ITG6_NICAT; Transcription factor bim2
STRING	XP_009594832.1	1e-169	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4426	23	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	7e-78	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]