PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01740g04019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 276aa MW: 30643.5 Da PI: 9.0628 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.3 | 1.5e-12 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT eE+e l +v+++G g Wk I r R+ ++k++w+++ Peinf101Scf01740g04019.1 5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEfnhllYSRSNIDLKDKWRNL 56 79***********************************9************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.042 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.88E-15 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 1.12E-20 | 6 | 57 | No hit | No description |
Pfam | PF13921 | 1.8E-8 | 8 | 62 | No hit | No description |
SMART | SM00526 | 4.9E-14 | 114 | 179 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 21.989 | 116 | 184 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 8.9E-13 | 116 | 191 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46689 | 7.88E-15 | 118 | 151 | IPR009057 | Homeodomain-like |
Pfam | PF00538 | 1.6E-8 | 119 | 176 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LYSRSNIDLK DKWRNLNVSA 60 NGQGPRDKSR TPKPKANPDA AAAPSQAPVS STPVPQDASA DTIMEDSSKC ALDGKTASKY 120 NQMIYDALSS LKDPNGSDTS TIVSFIEQRQ DVPQNFRRLL TARLRRLVQQ DKLEKIDNCY 180 RIKKEVLEKT KTATPKQNLV GPRQFPNSSY LGDTVEEATA TAVHKVADAE NKSFVAAEAV 240 KEAERVSKMA EDSERLLQLA KDIFDKCSHG DIMLMA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00652 | PBM | Transfer from LOC_Os01g51154 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009604177.1 | 1e-161 | PREDICTED: telomere repeat-binding factor 4-like | ||||
Refseq | XP_016469797.1 | 1e-161 | PREDICTED: telomere repeat-binding factor 4-like | ||||
TrEMBL | A0A1S3ZZC3 | 1e-159 | A0A1S3ZZC3_TOBAC; telomere repeat-binding factor 4-like | ||||
STRING | XP_009604177.1 | 1e-160 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2504 | 23 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17520.1 | 3e-59 | MYB_related family protein |