PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01734g02004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | G2-like | ||||||||
Protein Properties | Length: 291aa MW: 32286.6 Da PI: 7.2374 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 109.3 | 2e-34 | 49 | 103 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt+eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Peinf101Scf01734g02004.1 49 KPRLRWTNELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 103 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-33 | 46 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.903 | 46 | 106 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-18 | 48 | 106 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-25 | 49 | 104 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-8 | 51 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.5E-26 | 147 | 193 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MYSTLPIRNM GMEGTGDFIH HHHSLQNSLS VDGTNLPGDA CLVLTTDPKP RLRWTNELHE 60 RFVDAVTQLG GPDKATPKTI MRTMGVKGLT LYHLKSHLQK YRLGKQSAKE ATDNSKDVSC 120 PAESQDTGSS TSGSSRVIPQ DINDGLQVTE ALRVQMEVQR RLHEQLEVQR RLQLRIEAQG 180 KYLQSILEKA CKAFNSQSLE SNGLEVNREE LSELAMKVVN DCEGIVSVPS LPEITPCIDN 240 KNACHVPARL GDCLPSNGVG DLKKRPRAFT NVNGLPMESN TRQVEWMMSN T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-19 | 49 | 105 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-19 | 49 | 105 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-19 | 49 | 105 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-19 | 49 | 105 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00378 | DAP | Transfer from AT3G24120 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 2e-41 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. | |||
GenBank | HG975521 | 2e-41 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619229.1 | 0.0 | PREDICTED: protein PHR1-LIKE 3 isoform X1 | ||||
Swissprot | Q94A57 | 1e-117 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | A0A1S3YR42 | 0.0 | A0A1S3YR42_TOBAC; myb family transcription factor APL-like | ||||
TrEMBL | A0A1U7YCC6 | 0.0 | A0A1U7YCC6_NICSY; myb family transcription factor APL-like | ||||
STRING | XP_009619230.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3791 | 23 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 1e-115 | G2-like family protein |
Publications ? help Back to Top | |||
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