PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01705g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | TCP | ||||||||
Protein Properties | Length: 406aa MW: 46543.4 Da PI: 6.8727 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 141.7 | 5.8e-44 | 114 | 264 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssa 70 +gkkdrhski+T++g RdRRvRls+++a++fFdLqd LGfdk+sktieWL+ ++ aikel ++ + Peinf101Scf01705g00002.1 114 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDILGFDKASKTIEWLFSKSYDAIKELSENmpqkgyfdegnkinnsN---- 194 79**************************************************************88888777664443221.... PP TCP 71 seceaesssssasnsssg..............kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133 + ssss+++s+ + + +s+++ k++ k + + n++k esr kar+rarert+ekm+ k Peinf101Scf01705g00002.1 195 --M----SSSSEGKSHDEslmseceevvsrweE--NSNNEVKEKGKLREIVDNPHKrESRYKARERARERTKEKMMVK 264 ..1....11111111111345566667776432..3333555555566666999999******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.2E-45 | 114 | 262 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.883 | 116 | 174 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.148 | 243 | 260 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MFPQSNNDEP FLYTSKTFLE RSFTYDHHNP SSSSRHEDYP FLLNFPSPYL DNHELPLSQI 60 LPQQHQELEV IHHGMEAYPS KAHISGDTSA VEMSGEAKTS SKKRNLGATP RRRTGKKDRH 120 SKICTAQGVR DRRVRLSLHI ARKFFDLQDI LGFDKASKTI EWLFSKSYDA IKELSENMPQ 180 KGYFDEGNKI NNSNMSSSSE GKSHDESLMS ECEEVVSRWE ENSNNEVKEK GKLREIVDNP 240 HKRESRYKAR ERARERTKEK MMVKGLEKCK EWYEKNPNNI PDQLGSSSNT SGFLEESNKS 300 NSYNTCSVNQ EKGSPHEASS QSLEHQFANS GIIDENYSTT GGIDSGNCFM SFPGNWEMIN 360 FAPMPNVVQI PYAGNPSSIY NLANSSYQYQ SLDQEKHLSF RHHRLE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF274249 | 0.0 | JF274249.1 Petunia x hybrida TCP1 gene, complete cds. | |||
GenBank | KR002103 | 0.0 | KR002103.1 Petunia x hybrida TCP transcription factor 1 (TCP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006366063.1 | 1e-171 | PREDICTED: transcription factor TCP12 | ||||
TrEMBL | G0ZGI6 | 0.0 | G0ZGI6_PETHY; Putative transcription factor | ||||
STRING | PGSC0003DMT400019324 | 1e-170 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2436 | 23 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 1e-29 | TCP domain protein 12 |