PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01678g01002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 105aa MW: 12278.8 Da PI: 4.4768 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.7 | 2.3e-12 | 15 | 62 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 WT eEd+++ +a+++l + W Ia++++ ++t q+k+++q + Peinf101Scf01678g01002.1 15 LWTREEDKIFENAIAELFKTgedqEWGQIASRIP-NKTIQQVKHHYQLL 62 5****************9999*************.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.73E-10 | 11 | 69 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-7 | 12 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.88E-8 | 16 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-9 | 16 | 63 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-10 | 16 | 61 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.561 | 16 | 63 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MQRTSTMSEA SPTLLWTREE DKIFENAIAE LFKTGEDQEW GQIASRIPNK TIQQVKHHYQ 60 LLVEDITNIE TDLIPLPDYI EEDQVESNVK KEQEKKKKST DKECV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA25073 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-17 | MYB family protein |