PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01642g03018.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TCP
Protein Properties Length: 313aa    MW: 35552.9 Da    PI: 10.0465
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01642g03018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.79.8e-391062584131
                       TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.seceaesssssas.... 83 
                               kkdrhski T++g+RdRR+Rls+++a+ fF+Lqd+L fdk+skt+eWLl ++k ai e ++ s +s  ++++a++s ss+s    
  Peinf101Scf01642g03018.1 106 KKDRHSKINTAQGPRDRRIRLSIDIARNFFKLQDMLEFDKASKTVEWLLIKSKSAIMEHVNMSKQSGsNNVKAANSASSVSegev 190
                               9**********************************************************99944444133333333333332334 PP

                       TCP  84 ..........nsssg.............kaaksaakskksqksaasalnlakesrakarararertrekmr 131
                                         n   +             +++++++k+ ks ++aa + ++ kesr++ar++arert+ k++
  Peinf101Scf01642g03018.1 191 vsgiaeyypsN---DhqkkkknakknscNKEEKKKKKVKSVRRAAFHPAFTKESRKQAREKARERTELKKN 258
                               44444444441...044455666776777777788888899999999*******************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136932.266106164IPR017887Transcription factor TCP subgroup
PfamPF036346.7E-44106257IPR005333Transcription factor, TCP
PROSITE profilePS513709.148239256IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MYPSISNNSN YSPICSSLFN IPSPSMQYEH DLFFEYYYHD HHVLQQPQAL ADDSTETAFN  60
NMADSNKLDA LISGNELKEG GGCSNDKKGK RSNKNTSIPR NKRGYKKDRH SKINTAQGPR  120
DRRIRLSIDI ARNFFKLQDM LEFDKASKTV EWLLIKSKSA IMEHVNMSKQ SGSNNVKAAN  180
SASSVSEGEV VSGIAEYYPS NDHQKKKKNA KKNSCNKEEK KKKKVKSVRR AAFHPAFTKE  240
SRKQAREKAR ERTELKKNFG EAMAHDIMNL RSWSTEESGT KENIVNDCNL VVTGNWSPNT  300
IFSYQQNVGI LPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205223KKKNAKKNSCNKEEKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ4001030.0JQ400103.1 Petunia x hybrida putative transcription factor (TCP4) gene, complete cds.
GenBankJQ4001070.0JQ400107.1 Petunia x hybrida putative transcription factor (TCP4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019265949.11e-103PREDICTED: transcription factor TCP18-like
TrEMBLI1VE900.0I1VE90_PETHY; Putative transcription factor
STRINGXP_009765929.11e-103(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-23TCP family protein