PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01633g03009.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 309aa    MW: 34971.7 Da    PI: 5.4351
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01633g03009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.21.4e-3852148197
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               aCaaCk++rrkCa+dCvlapyfp++++++f n+hklFG+sn++k++++l++  +++am+++++++++ra+dPv G++++i++lq+
  Peinf101Scf01633g03009.1  52 ACAACKYQRRKCAPDCVLAPYFPHDRQRQFLNAHKLFGVSNITKIIRHLDQPLKDEAMRTIIFQSDVRANDPVGGCYRIIRDLQR 136
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelall 97 
                               +++  kael+ +
  Peinf101Scf01633g03009.1 137 HIDYCKAELDIA 148
                               *******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.62251152IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3652147IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTTISTPIPN HHHNTHAFTP ANNNLNHNYT KHANNNNNNN KNVLLRVSGA QACAACKYQR  60
RKCAPDCVLA PYFPHDRQRQ FLNAHKLFGV SNITKIIRHL DQPLKDEAMR TIIFQSDVRA  120
NDPVGGCYRI IRDLQRHIDY CKAELDIAVA AAASEQQQIL ADHATEESFN DNNCDGVVNQ  180
ADNLVNNTSS YEQPIDYQPH SYYIHPRCQQ ADDQQYDDLQ DGHLDLADIN FPWSLHEQES  240
TSTSTPAVIN QPSVHDQCDN IKPILEEISG YAEEGLSFEH EQTFDQRLVI AIISSFPTEL  300
VFLISTPVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-25491487107LOB family transfactor Ramosa2.1
5ly0_B3e-25491487107LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019228565.11e-154PREDICTED: LOB domain-containing protein 22-like
TrEMBLA0A1S3XPA61e-149A0A1S3XPA6_TOBAC; LOB domain-containing protein 22-like
STRINGXP_009623735.11e-152(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99262126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-50LOB domain-containing protein 22