![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peinf101Scf01590g05014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 433aa MW: 48202.8 Da PI: 8.3205 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.7 | 2.8e-13 | 82 | 138 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ ++k+ g ++ +e Aa+a++ a++k++g Peinf101Scf01590g05014.1 82 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 138 57*******************6666777775555599******************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.2E-9 | 82 | 138 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-15 | 82 | 147 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.3E-19 | 83 | 152 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.518 | 83 | 146 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-12 | 83 | 147 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-5 | 84 | 95 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-5 | 128 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 433 aa Download sequence Send to blast |
MFCSLAGTPL LMASPSSEPT AKPEGSSGND AGGGETSEAM GSIGTDQLLL YRGLKKAKKE 60 RGCTAKERIS KMPPCTAGKR SSIYRGVTRH RWTGRYEAHL WDKSTWNQNQ NKKGKQGAYD 120 DEEAAARAYD LAALKYWGPG TLINFPVTDY TRDLEEMQNV SREDYLASLR RKSGGFSRGI 180 SKYRPLSSRW DLQCGRVPGA DYFNSLHYGD DATVDNEYIG GFCMDRKIDL SSYIKWWGGN 240 KARQTDIHLK MSEETKVGCP EDIDNELRAS ELSIKQTEPY EMPRLGVNQE RKNHKSSAFS 300 AMSILSQSAA YKSLQEKVSK KKEKVENDEN ENKSTIIRLD RGKTIEKSSP DSGNERLGAA 360 FLNAGGSSIN RNLHPLTPLL SAPLLTNYNS IDPLTDPLLW TSLAPIFHTG SSRTAEVHKS 420 EASSDYTFFQ QED |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009783849.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 | ||||
Swissprot | Q8GWK2 | 1e-153 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A1U7XA86 | 0.0 | A0A1U7XA86_NICSY; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
STRING | XP_009783849.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10734 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-132 | AP2 family protein |