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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01577g02005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | TALE | ||||||||
Protein Properties | Length: 738aa MW: 81275.5 Da PI: 7.5432 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.6 | 2.4e-09 | 455 | 492 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Peinf101Scf01577g02005.1 455 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 492 554459******************************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.4E-60 | 240 | 387 | IPR006563 | POX domain |
Pfam | PF07526 | 1.1E-47 | 248 | 386 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.05 | 433 | 496 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-10 | 436 | 500 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.28E-12 | 436 | 497 | No hit | No description |
SuperFamily | SSF46689 | 5.56E-17 | 437 | 503 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.5E-29 | 439 | 502 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.9E-18 | 453 | 492 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 738 aa Download sequence Send to blast |
FMVPSSTSVA SSTAMYYQGS SEIQADGLQT LYLMNPNYIG YADTQQQQQQ HLQPANMFFL 60 NSAIGGNLPH GQIPSQAHTQ HFVGVPLQAN LQDLSRPSVH EAISASHHGL FQRLWSPADQ 120 NSGGCGVGDG ENGSHSHVQS SSVVSPGSGI GPTTDFTSQL GFQRPGTLVS PTQQHQGLSL 180 SLSPQQHQQQ KQQQMSFRSL PLDHHEISPH ENHQVGILSS SSSPRTNTHS NDNIRASGTS 240 SFSFPNGMIL GSKYLKAAQE LLDEVVNVGQ SIKADGAKDK HKVDNESMPL ASDVVVPTSG 300 SGESSSQKNS VVELTTAQRQ ELQMKKAKLV SMLDEVEQRY RQYHHQMQII VASFEQAAGI 360 GSAKSYTQLA LHTISKQFRC LKDAISGQIK ATSKSLGEEE SLGGKIEGSS RLKFVDHHLR 420 QQRALQQLGM MQPNAWRPQR GLPERAVSVL RAWLFEHFLH PYPKDSDKIM LAKQTGLTRS 480 QVSNWFINAR VRLWKPMVEE MYLEEVKNNQ EQNGLQENIN KNEPNKEVAS KSSVPHDTSK 540 LRKDKQLPSS MQDASPTDIS TSTISTSPNG GSLPGFSFIG SLNMENTAER NTKKPRNDMQ 600 NSSSSILSVD TQMKAAETKR GDNVNDEKQT RESYPLMTAY TMGEFGKFNP EQLATNFQGN 660 GVSLTLGLPP SENLALSGSH QQNFLPNQLG SRLEMGRIDS HYNRMSNPQA SHPTISYENI 720 DFQSGKRYPA QLLPDFVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 5e-16 | 442 | 500 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 5e-16 | 442 | 500 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF406698 | 0.0 | AF406698.1 Solanum tuberosum BEL1-related homeotic protein 11 (Bel11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016436403.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-124 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A1S3X9F7 | 0.0 | A0A1S3X9F7_TOBAC; BEL1-like homeodomain protein 1 | ||||
STRING | XP_009629592.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1478 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-110 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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