PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01565g00013.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 404aa    MW: 45444.8 Da    PI: 8.02
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01565g00013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.8e-06326226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                              k++lC+ffa  G C  G+ C F+H+
  Peinf101Scf01565g00013.1  3 KRVLCKFFAH-GACLKGEYCEFSHD 26
                              99****6666.*************5 PP
2zf-CCCH22.32.3e-073454526
                              --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                               C ++++ G C yG+rC++ H+
  Peinf101Scf01565g00013.1 34 VCTYYQK-GLCAYGSRCRYEHV 54
                              5******.***********997 PP
3zf-CCCH18.63.4e-06141163326
                               S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                               +++C+ fa+ G C++G++C+ +Hg
  Peinf101Scf01565g00013.1 141 QPICS-FAAAGNCPHGENCTHIHG 163
                               68899.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.751128IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-6326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1452956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00123055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-53253IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-53454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821138165IPR000571Zinc finger, CCCH-type
SMARTSM003560.004139164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4144163IPR000571Zinc finger, CCCH-type
SuperFamilySSF578509.32E-13199271No hitNo description
Gene3DG3DSA:3.30.40.104.3E-10200266IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001621.34E-4206266No hitNo description
PROSITE profilePS5008912.637207265IPR001841Zinc finger, RING-type
PfamPF000974.0E-8207264IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001849.9E-8207264IPR001841Zinc finger, RING-type
PROSITE patternPS005180231240IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.291294323IPR000571Zinc finger, CCCH-type
SMARTSM003560.19294322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEY CEFSHDWKDP PNNVCTYYQK GLCAYGSRCR YEHVKVSQQP  60
SLPSSSAPTQ HLLSASPPST LSPGMLADGA GLLSGVSAGY LASGSPFYPP NQPPWSENSE  120
HHDVAEIDNI VELKRINPAD QPICSFAAAG NCPHGENCTH IHGDLCPICG KHCLHPFRPH  180
EREEHMKTCE KRQKHLDLLK HSQEIECSVC LERVLSKTTA AERKFGILSE CDHPFCISCI  240
RNWRSGSPSS GMDINSTYRT CPICRKLSYF VIPSVIWYST EEEKQEILDS YKAKLRSIDC  300
KHFDFGNGTC PFGTSCFYKH QYRDGRQEEV VLRHLGSEDG STVIAKNIRL SDFLSNMRLR  360
VDVGSSLYSS KMARRFIAFC EIPLVKYALE LRCRHGIPSR RLLG
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345463.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X1
SwissprotQ5ZA071e-169C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A0V0IBJ40.0A0A0V0IBJ4_SOLCH; Putative zinc finger CCCH domain-containing protein 69-like
STRINGSolyc01g087030.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-154C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]