PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf01556g01032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | SBP | ||||||||
Protein Properties | Length: 511aa MW: 55788.4 Da PI: 9.2558 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 135.1 | 2.2e-42 | 151 | 226 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC +dls+ k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk++ Peinf101Scf01556g01032.1 151 CQVQGCGKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPH 226 **************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 32.624 | 148 | 225 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 4.2E-33 | 148 | 212 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.63E-39 | 150 | 229 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.7E-32 | 151 | 224 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MESWSYVSGG KGFISEESAN VNDGRVKNGV MGWESKTQSS YGSTVMCSSQ EVSDNQGFPE 60 LGSQNLMRKV MFNDPSRDNL TSKLGSGRIS SSSVVESNSR DSSLFDLKLG RFPDHIDAKV 120 FKSPKFMPNF NSAESIVPAK RLRAGGLSSF CQVQGCGKDL SSSKDYHKRH KVCEVHSKTA 180 KVIVNGIEQR FCQQCSRFHL LAEFDDGKRS CRKRLAGHNE RRRKPHTGTR FRGTSFATSS 240 FICQDILGGR ILHQPKYEMN DWYKNVKVED GVDYSPQLTM PFTNGQLQPK SVFTSYHAKK 300 QCPPLHNEGL PSLTGRKINE STNTSPHEMG GSDFVSPSLF RTTSIGTEVL HVLDTSSNIQ 360 GLSGISSSSN ALSLLSSQSQ DSSNHSTIIP VAHPLIPPSS NSQYNVTQVS KKVIGVSPQA 420 SASSLSNTFN PSGVNSAEGG LEQILIPSNT GGINGVIQGS NCVNTKNQLS CEDGPTINLF 480 QLSSQLQRVE HQRLSMQMKQ DNSAFPGLRI T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-30 | 150 | 224 | 10 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019230968.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 | ||||
TrEMBL | A0A2K9ZXI2 | 0.0 | A0A2K9ZXI2_PETHY; Squamosa promoter binding-like protein 6d | ||||
STRING | XP_009758722.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5187 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 2e-44 | SBP family protein |