PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01495g00038.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 584aa    MW: 64711.5 Da    PI: 9.4911
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01495g00038.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07485534147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                               r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Peinf101Scf01495g00038.1 485 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 534
                               6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.876480539IPR017930Myb domain
SMARTSM007172.0E-7484537IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-10485535IPR009057Homeodomain-like
SuperFamilySSF466899.4E-16486567IPR009057Homeodomain-like
CDDcd116601.88E-17486536No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MSSDCSEKFL FAKQFVNEDS RDEHGNFSSK TEPEASGCGA SCTLDTESDK HIKIELSNNA  60
KVPYKGAAVY SSQFPDLWDS KPSPLVTLDD SVRLSLSTYN APCRSLPVIR NDVKLATRDD  120
DENSGCTQPS TPNKASGSAP RMRDRPIKKL LASKYWEENL KSDDEGHANS GKCLLLCSPS  180
YSFALGFDIK RIFPDGETTH AYQNRSIGYK HQRSQRDFPF KKRKLFKCSM FSNSDGETST  240
DGKCSSPTND FHGNASGNSK ASSGGRAAAG TSVFNGGRAS FRPRDSHVKF RIKSFRVPEL  300
FVEIPENATR TVMEAVTSIL GGGLRIGVVF QGKKVRDDNK TLLXVRDDNK TLLQTGISHD  360
YKLDALGFSL EPNPIQASPP LGPDCRSCIL PCDTPHPLTR CPSPATVVHT GIRQGRSDDH  420
TGTNLSNFVE SDRDSAQSRP YTALEKISAN SRALVPVTAV NAPEALSVVP LRKPKRSEAT  480
QRRIRRPFSV AEVEALVQAV EKLGTGRWRD VKLRAFDNAK HRTYVDLKDK WKTLVHTARI  540
SPQQRRGEPV PQELLDRVLT AHAYWSQQQA KQQMKQPSET YLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-564725754107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214223QRDFPFKKRK
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754456e-92HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019247591.10.0PREDICTED: telomere repeat-binding protein 5-like
RefseqXP_019247592.10.0PREDICTED: telomere repeat-binding protein 5-like
SwissprotQ6R0E31e-121TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A1J6ICI30.0A0A1J6ICI3_NICAT; Telomere repeat-binding protein 5
STRINGPGSC0003DMT4000779690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-107TRF-like 2